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DAP3 (death associated protein 3)

Identity

Alias (NCBI)DAP-3
MRP-S29
MRPS29
S29mt
bMRP-10
HGNC (Hugo) DAP3
HGNC Alias symbMRPS29
DAP-3
MRP-S29
bMRP-10
MGC126058
MGC126059
DKFZp686G12159
HGNC Alias namemitochondrial 28S ribosomal protein S29
LocusID (NCBI) 7818
Atlas_Id 40262
Location 1q22  [Link to chromosome band 1q22]
Location_base_pair Starts at 155689094 and ends at 155739009 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DAP3 (1q22) / ATF3 (1q32.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Leukemias implicated (Data extracted from papers in the Atlas) [ 1 ]
  dup(1q) in ALL



Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(1;1)(q22;q32) DAP3/ATF3


External links

Nomenclature
HGNC (Hugo)DAP3   2673
Cards
Entrez_Gene (NCBI)DAP3  7818  death associated protein 3
AliasesDAP-3; MRP-S29; MRPS29; S29mt; 
bMRP-10
GeneCards (Weizmann)DAP3
Ensembl hg19 (Hinxton)ENSG00000132676 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000132676 [Gene_View]  ENSG00000132676 [Sequence]  chr1:155689094-155739009 [Contig_View]  DAP3 [Vega]
ICGC DataPortalENSG00000132676
TCGA cBioPortalDAP3
AceView (NCBI)DAP3
Genatlas (Paris)DAP3
WikiGenes7818
SOURCE (Princeton)DAP3
Genetics Home Reference (NIH)DAP3
Genomic and cartography
GoldenPath hg38 (UCSC)DAP3  -     chr1:155689094-155739009 +  1q22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DAP3  -     1q22   [Description]    (hg19-Feb_2009)
GoldenPathDAP3 - 1q22 [CytoView hg19]  DAP3 - 1q22 [CytoView hg38]
ImmunoBaseENSG00000132676
genome Data Viewer NCBIDAP3 [Mapview hg19]  
OMIM602074   
Gene and transcription
Genbank (Entrez)AK022879 AK225869 AK293117 AK298201 AK302281
RefSeq transcript (Entrez)NM_001199849 NM_001199850 NM_001199851 NM_004632 NM_033657
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DAP3
Alternative Splicing GalleryENSG00000132676
Gene ExpressionDAP3 [ NCBI-GEO ]   DAP3 [ EBI - ARRAY_EXPRESS ]   DAP3 [ SEEK ]   DAP3 [ MEM ]
Gene Expression Viewer (FireBrowse)DAP3 [ Firebrowse - Broad ]
GenevisibleExpression of DAP3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7818
GTEX Portal (Tissue expression)DAP3
Human Protein AtlasENSG00000132676-DAP3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP51398   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP51398  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP51398
Splice isoforms : SwissVarP51398
PhosPhoSitePlusP51398
Domains : Interpro (EBI)P-loop_NTPase    Ribosomal_S23/S29_mit    Ribosomal_S29_mit   
Domain families : Pfam (Sanger)DAP3 (PF10236)   
Domain families : Pfam (NCBI)pfam10236   
Conserved Domain (NCBI)DAP3
DMDM Disease mutations7818
Blocks (Seattle)DAP3
PDB (RSDB)3J9M    6NU2    6NU3   
PDB Europe3J9M    6NU2    6NU3   
PDB (PDBSum)3J9M    6NU2    6NU3   
PDB (IMB)3J9M    6NU2    6NU3   
Structural Biology KnowledgeBase3J9M    6NU2    6NU3   
SCOP (Structural Classification of Proteins)3J9M    6NU2    6NU3   
CATH (Classification of proteins structures)3J9M    6NU2    6NU3   
SuperfamilyP51398
Human Protein Atlas [tissue]ENSG00000132676-DAP3 [tissue]
Peptide AtlasP51398
HPRD03646
IPIIPI00018120   IPI00910684   IPI00984662   
Protein Interaction databases
DIP (DOE-UCLA)P51398
IntAct (EBI)P51398
FunCoupENSG00000132676
BioGRIDDAP3
STRING (EMBL)DAP3
ZODIACDAP3
Ontologies - Pathways
QuickGOP51398
Ontology : AmiGORNA binding  structural constituent of ribosome  protein binding  GTP binding  nucleoplasm  mitochondrion  mitochondrial inner membrane  mitochondrial small ribosomal subunit  mitochondrial small ribosomal subunit  mitochondrial translational elongation  mitochondrial translational termination  apoptotic signaling pathway  
Ontology : EGO-EBIRNA binding  structural constituent of ribosome  protein binding  GTP binding  nucleoplasm  mitochondrion  mitochondrial inner membrane  mitochondrial small ribosomal subunit  mitochondrial small ribosomal subunit  mitochondrial translational elongation  mitochondrial translational termination  apoptotic signaling pathway  
NDEx NetworkDAP3
Atlas of Cancer Signalling NetworkDAP3
Wikipedia pathwaysDAP3
Orthology - Evolution
OrthoDB7818
GeneTree (enSembl)ENSG00000132676
Phylogenetic Trees/Animal Genes : TreeFamDAP3
HOGENOMP51398
Homologs : HomoloGeneDAP3
Homology/Alignments : Family Browser (UCSC)DAP3
Gene fusions - Rearrangements
Fusion : MitelmanDAP3/ATF3 [1q22/1q32.3]  
Fusion : QuiverDAP3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDAP3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DAP3
dbVarDAP3
ClinVarDAP3
1000_GenomesDAP3 
Exome Variant ServerDAP3
GNOMAD BrowserENSG00000132676
Varsome BrowserDAP3
Genetic variants : HAPMAP7818
Genomic Variants (DGV)DAP3 [DGVbeta]
DECIPHERDAP3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDAP3 
Mutations
ICGC Data PortalDAP3 
TCGA Data PortalDAP3 
Broad Tumor PortalDAP3
OASIS PortalDAP3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDAP3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DDAP3
Mutations and Diseases : HGMDDAP3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch DAP3
DgiDB (Drug Gene Interaction Database)DAP3
DoCM (Curated mutations)DAP3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DAP3 (select a term)
intoGenDAP3
Cancer3DDAP3(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602074   
Orphanet
DisGeNETDAP3
MedgenDAP3
Genetic Testing Registry DAP3
NextProtP51398 [Medical]
TSGene7818
GENETestsDAP3
Target ValidationDAP3
Huge Navigator DAP3 [HugePedia]
snp3D : Map Gene to Disease7818
BioCentury BCIQDAP3
ClinGenDAP3
Clinical trials, drugs, therapy
Protein Interactions : CTD7818
Pharm GKB GenePA27141
Clinical trialDAP3
Miscellaneous
canSAR (ICR)DAP3 (select the gene name)
HarmonizomeDAP3
DataMed IndexDAP3
Probes
Litterature
PubMed94 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDAP3
EVEXDAP3
GoPubMedDAP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Thu Jul 16 15:10:01 CEST 2020

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