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DAZ1 (deleted in azoospermia 1)

Identity

Alias_namesDAZ
deleted in azoospermia
Alias_symbol (synonym)SPGY
Other alias
HGNC (Hugo) DAZ1
LocusID (NCBI) 1617
Atlas_Id 55626
Location Yq11.223  [Link to chromosome band Yq11]
Location_base_pair Starts at 25275502 and ends at 25345239 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DAZ1   2682
Cards
Entrez_Gene (NCBI)DAZ1  1617  deleted in azoospermia 1
AliasesDAZ; SPGY
GeneCards (Weizmann)DAZ1
Ensembl hg19 (Hinxton)ENSG00000188120 [Gene_View]  chrY:25275502-25345239 [Contig_View]  DAZ1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000188120 [Gene_View]  chrY:25275502-25345239 [Contig_View]  DAZ1 [Vega]
ICGC DataPortalENSG00000188120
TCGA cBioPortalDAZ1
AceView (NCBI)DAZ1
Genatlas (Paris)DAZ1
WikiGenes1617
SOURCE (Princeton)DAZ1
Genetics Home Reference (NIH)DAZ1
Genomic and cartography
GoldenPath hg19 (UCSC)DAZ1  -     chrY:25275502-25345239 -  Yq11.223   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)DAZ1  -     Yq11.223   [Description]    (hg38-Dec_2013)
EnsemblDAZ1 - Yq11.223 [CytoView hg19]  DAZ1 - Yq11.223 [CytoView hg38]
Mapping of homologs : NCBIDAZ1 [Mapview hg19]  DAZ1 [Mapview hg38]
OMIM400003   415000   
Gene and transcription
Genbank (Entrez)AF271087 AF271088 AK310133 BC114927 DB461291
RefSeq transcript (Entrez)NM_004081
RefSeq genomic (Entrez)NC_000024 NG_004755 NG_008286 NT_011903
Consensus coding sequences : CCDS (NCBI)DAZ1
Cluster EST : UnigeneHs.522868 [ NCBI ]
CGAP (NCI)Hs.522868
Alternative Splicing GalleryENSG00000188120
Gene ExpressionDAZ1 [ NCBI-GEO ]   DAZ1 [ EBI - ARRAY_EXPRESS ]   DAZ1 [ SEEK ]   DAZ1 [ MEM ]
Gene Expression Viewer (FireBrowse)DAZ1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1617
GTEX Portal (Tissue expression)DAZ1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NQZ3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NQZ3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NQZ3
Splice isoforms : SwissVarQ9NQZ3
PhosPhoSitePlusQ9NQZ3
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RRM_dom   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)DAZ1
DMDM Disease mutations1617
Blocks (Seattle)DAZ1
SuperfamilyQ9NQZ3
Human Protein AtlasENSG00000188120
Peptide AtlasQ9NQZ3
HPRD15958
IPIIPI00401506   
Protein Interaction databases
DIP (DOE-UCLA)Q9NQZ3
IntAct (EBI)Q9NQZ3
FunCoupENSG00000188120
BioGRIDDAZ1
STRING (EMBL)DAZ1
ZODIACDAZ1
Ontologies - Pathways
QuickGOQ9NQZ3
Ontology : AmiGOnucleotide binding  RNA binding  protein binding  nucleus  cytoplasm  multicellular organism development  spermatogenesis  translation activator activity  cell differentiation  positive regulation of translational initiation  
Ontology : EGO-EBInucleotide binding  RNA binding  protein binding  nucleus  cytoplasm  multicellular organism development  spermatogenesis  translation activator activity  cell differentiation  positive regulation of translational initiation  
NDEx NetworkDAZ1
Atlas of Cancer Signalling NetworkDAZ1
Wikipedia pathwaysDAZ1
Orthology - Evolution
OrthoDB1617
GeneTree (enSembl)ENSG00000188120
Phylogenetic Trees/Animal Genes : TreeFamDAZ1
HOVERGENQ9NQZ3
HOGENOMQ9NQZ3
Homologs : HomoloGeneDAZ1
Homology/Alignments : Family Browser (UCSC)DAZ1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDAZ1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DAZ1
dbVarDAZ1
ClinVarDAZ1
1000_GenomesDAZ1 
Exome Variant ServerDAZ1
ExAC (Exome Aggregation Consortium)DAZ1 (select the gene name)
Genetic variants : HAPMAP1617
Genomic Variants (DGV)DAZ1 [DGVbeta]
DECIPHER (Syndromes)Y:25275502-25345239  ENSG00000188120
CONAN: Copy Number AnalysisDAZ1 
Mutations
ICGC Data PortalDAZ1 
TCGA Data PortalDAZ1 
Broad Tumor PortalDAZ1
OASIS PortalDAZ1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDAZ1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDAZ1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DAZ1
DgiDB (Drug Gene Interaction Database)DAZ1
DoCM (Curated mutations)DAZ1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DAZ1 (select a term)
intoGenDAZ1
Cancer3DDAZ1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM400003    415000   
Orphanet257   
MedgenDAZ1
Genetic Testing Registry DAZ1
NextProtQ9NQZ3 [Medical]
TSGene1617
GENETestsDAZ1
Huge Navigator DAZ1 [HugePedia]
snp3D : Map Gene to Disease1617
BioCentury BCIQDAZ1
ClinGenDAZ1 (curated)
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1617
Chemical/Pharm GKB GenePA27149
Clinical trialDAZ1
Miscellaneous
canSAR (ICR)DAZ1 (select the gene name)
Probes
Litterature
PubMed67 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDAZ1
EVEXDAZ1
GoPubMedDAZ1
iHOPDAZ1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:58:24 CEST 2017

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