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DAZ3 (deleted in azoospermia 3)

Identity

Other aliaspDP1679
HGNC (Hugo) DAZ3
LocusID (NCBI) 57054
Atlas_Id 62296
Location Yq11.223  [Link to chromosome band Yq11]
Location_base_pair Starts at 25365581 and ends at 25437503 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DAZ3   15965
Cards
Entrez_Gene (NCBI)DAZ3  57054  deleted in azoospermia 3
AliasespDP1679
GeneCards (Weizmann)DAZ3
Ensembl hg19 (Hinxton)ENSG00000187191 [Gene_View]  chrY:25365581-25437503 [Contig_View]  DAZ3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000187191 [Gene_View]  chrY:25365581-25437503 [Contig_View]  DAZ3 [Vega]
ICGC DataPortalENSG00000187191
TCGA cBioPortalDAZ3
AceView (NCBI)DAZ3
Genatlas (Paris)DAZ3
WikiGenes57054
SOURCE (Princeton)DAZ3
Genetics Home Reference (NIH)DAZ3
Genomic and cartography
GoldenPath hg19 (UCSC)DAZ3  -     chrY:25365581-25437503 +  Yq11.223   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)DAZ3  -     Yq11.223   [Description]    (hg38-Dec_2013)
EnsemblDAZ3 - Yq11.223 [CytoView hg19]  DAZ3 - Yq11.223 [CytoView hg38]
Mapping of homologs : NCBIDAZ3 [Mapview hg19]  DAZ3 [Mapview hg38]
OMIM400027   415000   
Gene and transcription
Genbank (Entrez)AF248481 BC036648 BC113005
RefSeq transcript (Entrez)NM_020364
RefSeq genomic (Entrez)NC_000024 NG_004755 NG_028145 NT_011903
Consensus coding sequences : CCDS (NCBI)DAZ3
Cluster EST : UnigeneHs.592257 [ NCBI ]
CGAP (NCI)Hs.592257
Alternative Splicing GalleryENSG00000187191
Gene ExpressionDAZ3 [ NCBI-GEO ]   DAZ3 [ EBI - ARRAY_EXPRESS ]   DAZ3 [ SEEK ]   DAZ3 [ MEM ]
Gene Expression Viewer (FireBrowse)DAZ3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57054
GTEX Portal (Tissue expression)DAZ3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NR90   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NR90  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NR90
Splice isoforms : SwissVarQ9NR90
PhosPhoSitePlusQ9NR90
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RRM_dom   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)DAZ3
DMDM Disease mutations57054
Blocks (Seattle)DAZ3
SuperfamilyQ9NR90
Human Protein AtlasENSG00000187191
Peptide AtlasQ9NR90
HPRD15959
IPIIPI00006501   IPI00742060   IPI00942002   IPI00872074   IPI00872285   IPI00749494   
Protein Interaction databases
DIP (DOE-UCLA)Q9NR90
IntAct (EBI)Q9NR90
FunCoupENSG00000187191
BioGRIDDAZ3
STRING (EMBL)DAZ3
ZODIACDAZ3
Ontologies - Pathways
QuickGOQ9NR90
Ontology : AmiGOnucleotide binding  RNA binding  nucleus  cytoplasm  multicellular organismal development  spermatogenesis  cell differentiation  
Ontology : EGO-EBInucleotide binding  RNA binding  nucleus  cytoplasm  multicellular organismal development  spermatogenesis  cell differentiation  
NDEx NetworkDAZ3
Atlas of Cancer Signalling NetworkDAZ3
Wikipedia pathwaysDAZ3
Orthology - Evolution
OrthoDB57054
GeneTree (enSembl)ENSG00000187191
Phylogenetic Trees/Animal Genes : TreeFamDAZ3
HOVERGENQ9NR90
HOGENOMQ9NR90
Homologs : HomoloGeneDAZ3
Homology/Alignments : Family Browser (UCSC)DAZ3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDAZ3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DAZ3
dbVarDAZ3
ClinVarDAZ3
1000_GenomesDAZ3 
Exome Variant ServerDAZ3
ExAC (Exome Aggregation Consortium)DAZ3 (select the gene name)
Genetic variants : HAPMAP57054
Genomic Variants (DGV)DAZ3 [DGVbeta]
DECIPHER (Syndromes)Y:25365581-25437503  ENSG00000187191
CONAN: Copy Number AnalysisDAZ3 
Mutations
ICGC Data PortalDAZ3 
TCGA Data PortalDAZ3 
Broad Tumor PortalDAZ3
OASIS PortalDAZ3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDAZ3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDAZ3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DAZ3
DgiDB (Drug Gene Interaction Database)DAZ3
DoCM (Curated mutations)DAZ3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DAZ3 (select a term)
intoGenDAZ3
Cancer3DDAZ3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM400027    415000   
Orphanet257   
MedgenDAZ3
Genetic Testing Registry DAZ3
NextProtQ9NR90 [Medical]
TSGene57054
GENETestsDAZ3
Huge Navigator DAZ3 [HugePedia]
snp3D : Map Gene to Disease57054
BioCentury BCIQDAZ3
ClinGenDAZ3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57054
Chemical/Pharm GKB GenePA27151
Clinical trialDAZ3
Miscellaneous
canSAR (ICR)DAZ3 (select the gene name)
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDAZ3
EVEXDAZ3
GoPubMedDAZ3
iHOPDAZ3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:01:01 CET 2017

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