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DAZ4 (deleted in azoospermia 4)

Identity

Other aliaspDP1680
pDP1681
HGNC (Hugo) DAZ4
LocusID (NCBI) 57135
Atlas_Id 62297
Location Yq11.23  [Link to chromosome band Yq11]
Location_base_pair Starts at 26979967 and ends at 27053187 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
SHD (19p13.3) / DAZ4 (Yq11.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DAZ4   15966
Cards
Entrez_Gene (NCBI)DAZ4  57135  deleted in azoospermia 4
AliasespDP1680; pDP1681
GeneCards (Weizmann)DAZ4
Ensembl hg19 (Hinxton)ENSG00000205916 [Gene_View]  chrY:26979967-27053187 [Contig_View]  DAZ4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000205916 [Gene_View]  chrY:26979967-27053187 [Contig_View]  DAZ4 [Vega]
ICGC DataPortalENSG00000205916
TCGA cBioPortalDAZ4
AceView (NCBI)DAZ4
Genatlas (Paris)DAZ4
WikiGenes57135
SOURCE (Princeton)DAZ4
Genetics Home Reference (NIH)DAZ4
Genomic and cartography
GoldenPath hg19 (UCSC)DAZ4  -     chrY:26979967-27053187 +  Yq11.23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)DAZ4  -     Yq11.23   [Description]    (hg38-Dec_2013)
EnsemblDAZ4 - Yq11.23 [CytoView hg19]  DAZ4 - Yq11.23 [CytoView hg38]
Mapping of homologs : NCBIDAZ4 [Mapview hg19]  DAZ4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA608617 AF248482 AF248483 AL833003 BC047480
RefSeq transcript (Entrez)NM_001005375 NM_020420
RefSeq genomic (Entrez)NC_000024 NG_004755 NT_011903
Consensus coding sequences : CCDS (NCBI)DAZ4
Cluster EST : UnigeneHs.522868 [ NCBI ]
CGAP (NCI)Hs.522868
Alternative Splicing GalleryENSG00000205916
Gene ExpressionDAZ4 [ NCBI-GEO ]   DAZ4 [ EBI - ARRAY_EXPRESS ]   DAZ4 [ SEEK ]   DAZ4 [ MEM ]
Gene Expression Viewer (FireBrowse)DAZ4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57135
GTEX Portal (Tissue expression)DAZ4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86SG3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86SG3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86SG3
Splice isoforms : SwissVarQ86SG3
PhosPhoSitePlusQ86SG3
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RRM_dom   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)DAZ4
DMDM Disease mutations57135
Blocks (Seattle)DAZ4
SuperfamilyQ86SG3
Human Protein AtlasENSG00000205916
Peptide AtlasQ86SG3
HPRD13117
IPIIPI00936003   IPI01018895   IPI00930462   IPI00639994   
Protein Interaction databases
DIP (DOE-UCLA)Q86SG3
IntAct (EBI)Q86SG3
FunCoupENSG00000205916
BioGRIDDAZ4
STRING (EMBL)DAZ4
ZODIACDAZ4
Ontologies - Pathways
QuickGOQ86SG3
Ontology : AmiGOnucleotide binding  RNA binding  nucleus  cytoplasm  multicellular organismal development  spermatogenesis  cell differentiation  
Ontology : EGO-EBInucleotide binding  RNA binding  nucleus  cytoplasm  multicellular organismal development  spermatogenesis  cell differentiation  
NDEx NetworkDAZ4
Atlas of Cancer Signalling NetworkDAZ4
Wikipedia pathwaysDAZ4
Orthology - Evolution
OrthoDB57135
GeneTree (enSembl)ENSG00000205916
Phylogenetic Trees/Animal Genes : TreeFamDAZ4
HOVERGENQ86SG3
HOGENOMQ86SG3
Homologs : HomoloGeneDAZ4
Homology/Alignments : Family Browser (UCSC)DAZ4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDAZ4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DAZ4
dbVarDAZ4
ClinVarDAZ4
1000_GenomesDAZ4 
Exome Variant ServerDAZ4
ExAC (Exome Aggregation Consortium)DAZ4 (select the gene name)
Genetic variants : HAPMAP57135
Genomic Variants (DGV)DAZ4 [DGVbeta]
DECIPHER (Syndromes)Y:26979967-27053187  ENSG00000205916
CONAN: Copy Number AnalysisDAZ4 
Mutations
ICGC Data PortalDAZ4 
TCGA Data PortalDAZ4 
Broad Tumor PortalDAZ4
OASIS PortalDAZ4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDAZ4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDAZ4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DAZ4
DgiDB (Drug Gene Interaction Database)DAZ4
DoCM (Curated mutations)DAZ4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DAZ4 (select a term)
intoGenDAZ4
Cancer3DDAZ4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet257   
MedgenDAZ4
Genetic Testing Registry DAZ4
NextProtQ86SG3 [Medical]
TSGene57135
GENETestsDAZ4
Huge Navigator DAZ4 [HugePedia]
snp3D : Map Gene to Disease57135
BioCentury BCIQDAZ4
ClinGenDAZ4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57135
Chemical/Pharm GKB GenePA27152
Clinical trialDAZ4
Miscellaneous
canSAR (ICR)DAZ4 (select the gene name)
Probes
Litterature
PubMed31 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDAZ4
EVEXDAZ4
GoPubMedDAZ4
iHOPDAZ4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:01:02 CET 2017

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