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DAZAP1 (DAZ associated protein 1)

Identity

Alias_symbol (synonym)MGC19907
Other alias-
HGNC (Hugo) DAZAP1
LocusID (NCBI) 26528
Atlas_Id 52989
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 1407569 and ends at 1435687 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DAZAP1 (19p13.3) / DAZAP1 (19p13.3)DAZAP1 (19p13.3) / DYM (18q21.1)DAZAP1 (19p13.3) / FKBP8 (19p13.11)
DAZAP1 (19p13.3) / IDH3G (Xq28)DAZAP1 (19p13.3) / MAD1L1 (7p22.3)DAZAP1 (19p13.3) / MEF2D (1q22)
DYM (18q21.1) / DAZAP1 (19p13.3)IGLL5 (22q11.22) / DAZAP1 (19p13.3)IKBKG (Xq28) / DAZAP1 (19p13.3)
MEF2D (1q22) / DAZAP1 (19p13.3)PRPF40B (12q13.12) / DAZAP1 (19p13.3)TCF7L1 (2p11.2) / DAZAP1 (19p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DAZAP1   2683
Cards
Entrez_Gene (NCBI)DAZAP1  26528  DAZ associated protein 1
Aliases
GeneCards (Weizmann)DAZAP1
Ensembl hg19 (Hinxton)ENSG00000071626 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000071626 [Gene_View]  chr19:1407569-1435687 [Contig_View]  DAZAP1 [Vega]
ICGC DataPortalENSG00000071626
TCGA cBioPortalDAZAP1
AceView (NCBI)DAZAP1
Genatlas (Paris)DAZAP1
WikiGenes26528
SOURCE (Princeton)DAZAP1
Genetics Home Reference (NIH)DAZAP1
Genomic and cartography
GoldenPath hg38 (UCSC)DAZAP1  -     chr19:1407569-1435687 +  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DAZAP1  -     19p13.3   [Description]    (hg19-Feb_2009)
EnsemblDAZAP1 - 19p13.3 [CytoView hg19]  DAZAP1 - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBIDAZAP1 [Mapview hg19]  DAZAP1 [Mapview hg38]
OMIM607430   
Gene and transcription
Genbank (Entrez)AF181719 AI802551 AK056850 AK092894 AK124583
RefSeq transcript (Entrez)NM_018959 NM_170711
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DAZAP1
Cluster EST : UnigeneHs.222510 [ NCBI ]
CGAP (NCI)Hs.222510
Alternative Splicing GalleryENSG00000071626
Gene ExpressionDAZAP1 [ NCBI-GEO ]   DAZAP1 [ EBI - ARRAY_EXPRESS ]   DAZAP1 [ SEEK ]   DAZAP1 [ MEM ]
Gene Expression Viewer (FireBrowse)DAZAP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26528
GTEX Portal (Tissue expression)DAZAP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96EP5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96EP5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96EP5
Splice isoforms : SwissVarQ96EP5
PhosPhoSitePlusQ96EP5
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)DAZAP1_RRM1    DAZAP1_RRM2    Nucleotide-bd_a/b_plait    RRM_dom   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)DAZAP1
DMDM Disease mutations26528
Blocks (Seattle)DAZAP1
PDB (SRS)2DGS    2DH8   
PDB (PDBSum)2DGS    2DH8   
PDB (IMB)2DGS    2DH8   
PDB (RSDB)2DGS    2DH8   
Structural Biology KnowledgeBase2DGS    2DH8   
SCOP (Structural Classification of Proteins)2DGS    2DH8   
CATH (Classification of proteins structures)2DGS    2DH8   
SuperfamilyQ96EP5
Human Protein AtlasENSG00000071626
Peptide AtlasQ96EP5
HPRD08462
IPIIPI00165230   IPI00335930   
Protein Interaction databases
DIP (DOE-UCLA)Q96EP5
IntAct (EBI)Q96EP5
FunCoupENSG00000071626
BioGRIDDAZAP1
STRING (EMBL)DAZAP1
ZODIACDAZAP1
Ontologies - Pathways
QuickGOQ96EP5
Ontology : AmiGOmaternal placenta development  RNA binding  nucleoplasm  cytosol  spermatogenesis  cell proliferation  cell differentiation  RNA stem-loop binding  positive regulation of mRNA splicing, via spliceosome  
Ontology : EGO-EBImaternal placenta development  RNA binding  nucleoplasm  cytosol  spermatogenesis  cell proliferation  cell differentiation  RNA stem-loop binding  positive regulation of mRNA splicing, via spliceosome  
Pathways : KEGGmRNA surveillance pathway   
NDEx NetworkDAZAP1
Atlas of Cancer Signalling NetworkDAZAP1
Wikipedia pathwaysDAZAP1
Orthology - Evolution
OrthoDB26528
GeneTree (enSembl)ENSG00000071626
Phylogenetic Trees/Animal Genes : TreeFamDAZAP1
HOVERGENQ96EP5
HOGENOMQ96EP5
Homologs : HomoloGeneDAZAP1
Homology/Alignments : Family Browser (UCSC)DAZAP1
Gene fusions - Rearrangements
Fusion : MitelmanDYM/DAZAP1 [18q21.1/19p13.3]  [t(18;19)(q21;p13)]  
Fusion : MitelmanMEF2D/DAZAP1 [1q22/19p13.3]  [t(1;19)(q22;p13)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDAZAP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DAZAP1
dbVarDAZAP1
ClinVarDAZAP1
1000_GenomesDAZAP1 
Exome Variant ServerDAZAP1
ExAC (Exome Aggregation Consortium)DAZAP1 (select the gene name)
Genetic variants : HAPMAP26528
Genomic Variants (DGV)DAZAP1 [DGVbeta]
DECIPHERDAZAP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDAZAP1 
Mutations
ICGC Data PortalDAZAP1 
TCGA Data PortalDAZAP1 
Broad Tumor PortalDAZAP1
OASIS PortalDAZAP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDAZAP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDAZAP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DAZAP1
DgiDB (Drug Gene Interaction Database)DAZAP1
DoCM (Curated mutations)DAZAP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DAZAP1 (select a term)
intoGenDAZAP1
Cancer3DDAZAP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607430   
Orphanet
MedgenDAZAP1
Genetic Testing Registry DAZAP1
NextProtQ96EP5 [Medical]
TSGene26528
GENETestsDAZAP1
Target ValidationDAZAP1
Huge Navigator DAZAP1 [HugePedia]
snp3D : Map Gene to Disease26528
BioCentury BCIQDAZAP1
ClinGenDAZAP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26528
Chemical/Pharm GKB GenePA27153
Clinical trialDAZAP1
Miscellaneous
canSAR (ICR)DAZAP1 (select the gene name)
Probes
Litterature
PubMed34 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDAZAP1
EVEXDAZAP1
GoPubMedDAZAP1
iHOPDAZAP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:30:36 CEST 2017

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