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DAZL (deleted in azoospermia like)

Identity

Alias_namesDAZLA
deleted in azoospermia-like
Alias_symbol (synonym)DAZH
SPGYLA
MGC26406
DAZL1
Other alias
HGNC (Hugo) DAZL
LocusID (NCBI) 1618
Atlas_Id 52990
Location 3p24.3  [Link to chromosome band 3p24]
Location_base_pair Starts at 16586794 and ends at 16604790 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RAF1 (3p25.2) / DAZL (3p24.3)RFTN1 (3p25.1) / DAZL (3p24.3)RAF1 3p25.2 / DAZL 3p24.3
RFTN1 3p25.1 / DAZL 3p24.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DAZL   2685
Cards
Entrez_Gene (NCBI)DAZL  1618  deleted in azoospermia like
AliasesDAZH; DAZL1; DAZLA; SPGYLA
GeneCards (Weizmann)DAZL
Ensembl hg19 (Hinxton)ENSG00000092345 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000092345 [Gene_View]  chr3:16586794-16604790 [Contig_View]  DAZL [Vega]
ICGC DataPortalENSG00000092345
TCGA cBioPortalDAZL
AceView (NCBI)DAZL
Genatlas (Paris)DAZL
WikiGenes1618
SOURCE (Princeton)DAZL
Genetics Home Reference (NIH)DAZL
Genomic and cartography
GoldenPath hg38 (UCSC)DAZL  -     chr3:16586794-16604790 -  3p24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DAZL  -     3p24.3   [Description]    (hg19-Feb_2009)
EnsemblDAZL - 3p24.3 [CytoView hg19]  DAZL - 3p24.3 [CytoView hg38]
Mapping of homologs : NCBIDAZL [Mapview hg19]  DAZL [Mapview hg38]
OMIM601486   
Gene and transcription
Genbank (Entrez)AK303026 AK310341 BC027595 BX648638 DB080081
RefSeq transcript (Entrez)NM_001190811 NM_001351
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DAZL
Cluster EST : UnigeneHs.131179 [ NCBI ]
CGAP (NCI)Hs.131179
Alternative Splicing GalleryENSG00000092345
Gene ExpressionDAZL [ NCBI-GEO ]   DAZL [ EBI - ARRAY_EXPRESS ]   DAZL [ SEEK ]   DAZL [ MEM ]
Gene Expression Viewer (FireBrowse)DAZL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1618
GTEX Portal (Tissue expression)DAZL
Human Protein AtlasENSG00000092345-DAZL [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ92904   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ92904  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ92904
Splice isoforms : SwissVarQ92904
PhosPhoSitePlusQ92904
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RRM_dom   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)DAZL
DMDM Disease mutations1618
Blocks (Seattle)DAZL
SuperfamilyQ92904
Human Protein Atlas [tissue]ENSG00000092345-DAZL [tissue]
Peptide AtlasQ92904
HPRD09029
IPIIPI00871660   IPI00395811   IPI00927411   
Protein Interaction databases
DIP (DOE-UCLA)Q92904
IntAct (EBI)Q92904
FunCoupENSG00000092345
BioGRIDDAZL
STRING (EMBL)DAZL
ZODIACDAZL
Ontologies - Pathways
QuickGOQ92904
Ontology : AmiGORNA binding  protein binding  nucleus  cytoplasm  multicellular organism development  germ cell development  spermatogenesis  translation activator activity  positive regulation of translational initiation  
Ontology : EGO-EBIRNA binding  protein binding  nucleus  cytoplasm  multicellular organism development  germ cell development  spermatogenesis  translation activator activity  positive regulation of translational initiation  
NDEx NetworkDAZL
Atlas of Cancer Signalling NetworkDAZL
Wikipedia pathwaysDAZL
Orthology - Evolution
OrthoDB1618
GeneTree (enSembl)ENSG00000092345
Phylogenetic Trees/Animal Genes : TreeFamDAZL
HOVERGENQ92904
HOGENOMQ92904
Homologs : HomoloGeneDAZL
Homology/Alignments : Family Browser (UCSC)DAZL
Gene fusions - Rearrangements
Fusion : MitelmanRAF1/DAZL [3p25.2/3p24.3]  [t(3;3)(p24;p25)]  
Fusion : MitelmanRFTN1/DAZL [3p25.1/3p24.3]  [t(3;3)(p24;p24)]  
Fusion: TCGA_MDACCRFTN1 3p25.1 DAZL 3p24.3 BRCA LUAD
Tumor Fusion PortalDAZL
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDAZL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DAZL
dbVarDAZL
ClinVarDAZL
1000_GenomesDAZL 
Exome Variant ServerDAZL
ExAC (Exome Aggregation Consortium)ENSG00000092345
GNOMAD BrowserENSG00000092345
Genetic variants : HAPMAP1618
Genomic Variants (DGV)DAZL [DGVbeta]
DECIPHERDAZL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDAZL 
Mutations
ICGC Data PortalDAZL 
TCGA Data PortalDAZL 
Broad Tumor PortalDAZL
OASIS PortalDAZL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDAZL  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDAZL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DAZL
DgiDB (Drug Gene Interaction Database)DAZL
DoCM (Curated mutations)DAZL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DAZL (select a term)
intoGenDAZL
Cancer3DDAZL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601486   
Orphanet
DisGeNETDAZL
MedgenDAZL
Genetic Testing Registry DAZL
NextProtQ92904 [Medical]
TSGene1618
GENETestsDAZL
Target ValidationDAZL
Huge Navigator DAZL [HugePedia]
snp3D : Map Gene to Disease1618
BioCentury BCIQDAZL
ClinGenDAZL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1618
Chemical/Pharm GKB GenePA27155
Clinical trialDAZL
Miscellaneous
canSAR (ICR)DAZL (select the gene name)
Probes
Litterature
PubMed66 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDAZL
EVEXDAZL
GoPubMedDAZL
iHOPDAZL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:09:59 CET 2017

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