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DBNDD1 (dysbindin domain containing 1)

Identity

Alias_namesdysbindin (dystrobrevin binding protein 1) domain containing 1
Alias_symbol (synonym)MGC3101
FLJ12582
Other alias-
HGNC (Hugo) DBNDD1
LocusID (NCBI) 79007
Atlas_Id 54248
Location 16q24.3  [Link to chromosome band 16q24]
Location_base_pair Starts at 90004865 and ends at 90019555 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DBNDD1 (16q24.3) / NAA60 (16p13.3)DBNDD1 (16q24.3) / TPGS1 (19p13.3)NAT8L (4p16.3) / DBNDD1 (16q24.3)
DBNDD1 16q24.3 C19orf20NAT8L 4p16.3 / DBNDD1 16q24.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DBNDD1   28455
Cards
Entrez_Gene (NCBI)DBNDD1  79007  dysbindin domain containing 1
Aliases
GeneCards (Weizmann)DBNDD1
Ensembl hg19 (Hinxton)ENSG00000003249 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000003249 [Gene_View]  chr16:90004865-90019555 [Contig_View]  DBNDD1 [Vega]
ICGC DataPortalENSG00000003249
TCGA cBioPortalDBNDD1
AceView (NCBI)DBNDD1
Genatlas (Paris)DBNDD1
WikiGenes79007
SOURCE (Princeton)DBNDD1
Genetics Home Reference (NIH)DBNDD1
Genomic and cartography
GoldenPath hg38 (UCSC)DBNDD1  -     chr16:90004865-90019555 -  16q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DBNDD1  -     16q24.3   [Description]    (hg19-Feb_2009)
EnsemblDBNDD1 - 16q24.3 [CytoView hg19]  DBNDD1 - 16q24.3 [CytoView hg38]
Mapping of homologs : NCBIDBNDD1 [Mapview hg19]  DBNDD1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK022644 AK090696 AK090965 AK096507 AK298932
RefSeq transcript (Entrez)NM_001042610 NM_001288708 NM_001288709 NM_024043
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DBNDD1
Cluster EST : UnigeneHs.301394 [ NCBI ]
CGAP (NCI)Hs.301394
Alternative Splicing GalleryENSG00000003249
Gene ExpressionDBNDD1 [ NCBI-GEO ]   DBNDD1 [ EBI - ARRAY_EXPRESS ]   DBNDD1 [ SEEK ]   DBNDD1 [ MEM ]
Gene Expression Viewer (FireBrowse)DBNDD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79007
GTEX Portal (Tissue expression)DBNDD1
Human Protein AtlasENSG00000003249-DBNDD1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H9R9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H9R9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H9R9
Splice isoforms : SwissVarQ9H9R9
PhosPhoSitePlusQ9H9R9
Domains : Interpro (EBI)Dysbindin   
Domain families : Pfam (Sanger)Dysbindin (PF04440)   
Domain families : Pfam (NCBI)pfam04440   
Conserved Domain (NCBI)DBNDD1
DMDM Disease mutations79007
Blocks (Seattle)DBNDD1
SuperfamilyQ9H9R9
Human Protein Atlas [tissue]ENSG00000003249-DBNDD1 [tissue]
Peptide AtlasQ9H9R9
HPRD08327
IPIIPI00304285   IPI00031533   IPI00872543   
Protein Interaction databases
DIP (DOE-UCLA)Q9H9R9
IntAct (EBI)Q9H9R9
FunCoupENSG00000003249
BioGRIDDBNDD1
STRING (EMBL)DBNDD1
ZODIACDBNDD1
Ontologies - Pathways
QuickGOQ9H9R9
Ontology : AmiGOcytoplasm  
Ontology : EGO-EBIcytoplasm  
NDEx NetworkDBNDD1
Atlas of Cancer Signalling NetworkDBNDD1
Wikipedia pathwaysDBNDD1
Orthology - Evolution
OrthoDB79007
GeneTree (enSembl)ENSG00000003249
Phylogenetic Trees/Animal Genes : TreeFamDBNDD1
HOVERGENQ9H9R9
HOGENOMQ9H9R9
Homologs : HomoloGeneDBNDD1
Homology/Alignments : Family Browser (UCSC)DBNDD1
Gene fusions - Rearrangements
Fusion : MitelmanDBNDD1/TPGS1 [16q24.3/19p13.3]  
Fusion : MitelmanNAT8L/DBNDD1 [4p16.3/16q24.3]  [t(4;16)(p16;q24)]  
Fusion: TCGA_MDACCDBNDD1 16q24.3 C19orf20 BRCA
Fusion: TCGA_MDACCNAT8L 4p16.3 DBNDD1 16q24.3 GBM
Tumor Fusion PortalDBNDD1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDBNDD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DBNDD1
dbVarDBNDD1
ClinVarDBNDD1
1000_GenomesDBNDD1 
Exome Variant ServerDBNDD1
ExAC (Exome Aggregation Consortium)ENSG00000003249
GNOMAD BrowserENSG00000003249
Genetic variants : HAPMAP79007
Genomic Variants (DGV)DBNDD1 [DGVbeta]
DECIPHERDBNDD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDBNDD1 
Mutations
ICGC Data PortalDBNDD1 
TCGA Data PortalDBNDD1 
Broad Tumor PortalDBNDD1
OASIS PortalDBNDD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDBNDD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDBNDD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DBNDD1
DgiDB (Drug Gene Interaction Database)DBNDD1
DoCM (Curated mutations)DBNDD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DBNDD1 (select a term)
intoGenDBNDD1
Cancer3DDBNDD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETDBNDD1
MedgenDBNDD1
Genetic Testing Registry DBNDD1
NextProtQ9H9R9 [Medical]
TSGene79007
GENETestsDBNDD1
Target ValidationDBNDD1
Huge Navigator DBNDD1 [HugePedia]
snp3D : Map Gene to Disease79007
BioCentury BCIQDBNDD1
ClinGenDBNDD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79007
Chemical/Pharm GKB GenePA144596443
Clinical trialDBNDD1
Miscellaneous
canSAR (ICR)DBNDD1 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDBNDD1
EVEXDBNDD1
GoPubMedDBNDD1
iHOPDBNDD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:10:00 CET 2017

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