Atlas of Genetics and Cytogenetics in Oncology and Haematology


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DBX1 (developing brain homeobox 1)

Identity

Other alias-
HGNC (Hugo) DBX1
LocusID (NCBI) 120237
Atlas_Id 62309
Location 11p15.1  [Link to chromosome band 11p15]
Location_base_pair Starts at 20156214 and ends at 20160324 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DBX1   33185
Cards
Entrez_Gene (NCBI)DBX1  120237  developing brain homeobox 1
Aliases
GeneCards (Weizmann)DBX1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr11:20156214-20160324 [Contig_View]  DBX1 [Vega]
TCGA cBioPortalDBX1
AceView (NCBI)DBX1
Genatlas (Paris)DBX1
WikiGenes120237
SOURCE (Princeton)DBX1
Genetics Home Reference (NIH)DBX1
Genomic and cartography
GoldenPath hg38 (UCSC)DBX1  -     chr11:20156214-20160324 -  11p15.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DBX1  -     11p15.1   [Description]    (hg19-Feb_2009)
EnsemblDBX1 - 11p15.1 [CytoView hg19]  DBX1 - 11p15.1 [CytoView hg38]
Mapping of homologs : NCBIDBX1 [Mapview hg19]  DBX1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC156154 BC172465
RefSeq transcript (Entrez)NM_001029865
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DBX1
Cluster EST : UnigeneHs.558604 [ NCBI ]
CGAP (NCI)Hs.558604
Gene ExpressionDBX1 [ NCBI-GEO ]   DBX1 [ EBI - ARRAY_EXPRESS ]   DBX1 [ SEEK ]   DBX1 [ MEM ]
Gene Expression Viewer (FireBrowse)DBX1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)120237
GTEX Portal (Tissue expression)DBX1
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NMT0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NMT0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NMT0
Splice isoforms : SwissVarA6NMT0
PhosPhoSitePlusA6NMT0
Domaine pattern : Prosite (Expaxy)HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)   
Domains : Interpro (EBI)Homeobox-like    Homeobox_CS    Homeobox_dom    Homeobox_metazoa    HTH_motif   
Domain families : Pfam (Sanger)Homeobox (PF00046)   
Domain families : Pfam (NCBI)pfam00046   
Domain families : Smart (EMBL)HOX (SM00389)  
Conserved Domain (NCBI)DBX1
DMDM Disease mutations120237
Blocks (Seattle)DBX1
SuperfamilyA6NMT0
Peptide AtlasA6NMT0
HPRD18721
IPIIPI00027329   
Protein Interaction databases
DIP (DOE-UCLA)A6NMT0
IntAct (EBI)A6NMT0
BioGRIDDBX1
STRING (EMBL)DBX1
ZODIACDBX1
Ontologies - Pathways
QuickGOA6NMT0
Ontology : AmiGOnucleus  regulation of transcription from RNA polymerase II promoter  ventral spinal cord interneuron specification  sequence-specific DNA binding  
Ontology : EGO-EBInucleus  regulation of transcription from RNA polymerase II promoter  ventral spinal cord interneuron specification  sequence-specific DNA binding  
NDEx NetworkDBX1
Atlas of Cancer Signalling NetworkDBX1
Wikipedia pathwaysDBX1
Orthology - Evolution
OrthoDB120237
Phylogenetic Trees/Animal Genes : TreeFamDBX1
HOVERGENA6NMT0
HOGENOMA6NMT0
Homologs : HomoloGeneDBX1
Homology/Alignments : Family Browser (UCSC)DBX1
Gene fusions - Rearrangements
Fusion: Tumor Portal DBX1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDBX1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DBX1
dbVarDBX1
ClinVarDBX1
1000_GenomesDBX1 
Exome Variant ServerDBX1
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP120237
Genomic Variants (DGV)DBX1 [DGVbeta]
DECIPHERDBX1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDBX1 
Mutations
ICGC Data PortalDBX1 
TCGA Data PortalDBX1 
Broad Tumor PortalDBX1
OASIS PortalDBX1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDBX1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDBX1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DBX1
DgiDB (Drug Gene Interaction Database)DBX1
DoCM (Curated mutations)DBX1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DBX1 (select a term)
intoGenDBX1
Cancer3DDBX1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenDBX1
Genetic Testing Registry DBX1
NextProtA6NMT0 [Medical]
TSGene120237
GENETestsDBX1
Target ValidationDBX1
Huge Navigator DBX1 [HugePedia]
snp3D : Map Gene to Disease120237
BioCentury BCIQDBX1
ClinGenDBX1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD120237
Chemical/Pharm GKB GenePA162383238
Clinical trialDBX1
Miscellaneous
canSAR (ICR)DBX1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDBX1
EVEXDBX1
GoPubMedDBX1
iHOPDBX1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:44:03 CET 2017

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