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DBX2 (developing brain homeobox 2)

Identity

Alias_symbol (synonym)FLJ16139
Other alias-
HGNC (Hugo) DBX2
LocusID (NCBI) 440097
Atlas_Id 52991
Location 12q12  [Link to chromosome band 12q12]
Location_base_pair Starts at 45014756 and ends at 45051099 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SLC20A2 (8p11.21) / DBX2 (12q12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DBX2   33186
Cards
Entrez_Gene (NCBI)DBX2  440097  developing brain homeobox 2
Aliases
GeneCards (Weizmann)DBX2
Ensembl hg19 (Hinxton)ENSG00000185610 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185610 [Gene_View]  chr12:45014756-45051099 [Contig_View]  DBX2 [Vega]
ICGC DataPortalENSG00000185610
TCGA cBioPortalDBX2
AceView (NCBI)DBX2
Genatlas (Paris)DBX2
WikiGenes440097
SOURCE (Princeton)DBX2
Genetics Home Reference (NIH)DBX2
Genomic and cartography
GoldenPath hg38 (UCSC)DBX2  -     chr12:45014756-45051099 -  12q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DBX2  -     12q12   [Description]    (hg19-Feb_2009)
EnsemblDBX2 - 12q12 [CytoView hg19]  DBX2 - 12q12 [CytoView hg38]
Mapping of homologs : NCBIDBX2 [Mapview hg19]  DBX2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK131230 BC148395
RefSeq transcript (Entrez)NM_001004329
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DBX2
Cluster EST : UnigeneHs.302764 [ NCBI ]
CGAP (NCI)Hs.302764
Alternative Splicing GalleryENSG00000185610
Gene ExpressionDBX2 [ NCBI-GEO ]   DBX2 [ EBI - ARRAY_EXPRESS ]   DBX2 [ SEEK ]   DBX2 [ MEM ]
Gene Expression Viewer (FireBrowse)DBX2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)440097
GTEX Portal (Tissue expression)DBX2
Human Protein AtlasENSG00000185610-DBX2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZNG2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZNG2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZNG2
Splice isoforms : SwissVarQ6ZNG2
PhosPhoSitePlusQ6ZNG2
Domaine pattern : Prosite (Expaxy)HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)   
Domains : Interpro (EBI)Homeobox-like    Homeobox_CS    Homeobox_dom    Homeobox_metazoa    HTH_motif   
Domain families : Pfam (Sanger)Homeobox (PF00046)   
Domain families : Pfam (NCBI)pfam00046   
Domain families : Smart (EMBL)HOX (SM00389)  
Conserved Domain (NCBI)DBX2
DMDM Disease mutations440097
Blocks (Seattle)DBX2
SuperfamilyQ6ZNG2
Human Protein Atlas [tissue]ENSG00000185610-DBX2 [tissue]
Peptide AtlasQ6ZNG2
HPRD16910
IPIIPI00418609   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZNG2
IntAct (EBI)Q6ZNG2
FunCoupENSG00000185610
BioGRIDDBX2
STRING (EMBL)DBX2
ZODIACDBX2
Ontologies - Pathways
QuickGOQ6ZNG2
Ontology : AmiGOnucleus  regulation of transcription, DNA-templated  sequence-specific DNA binding  
Ontology : EGO-EBInucleus  regulation of transcription, DNA-templated  sequence-specific DNA binding  
NDEx NetworkDBX2
Atlas of Cancer Signalling NetworkDBX2
Wikipedia pathwaysDBX2
Orthology - Evolution
OrthoDB440097
GeneTree (enSembl)ENSG00000185610
Phylogenetic Trees/Animal Genes : TreeFamDBX2
HOVERGENQ6ZNG2
HOGENOMQ6ZNG2
Homologs : HomoloGeneDBX2
Homology/Alignments : Family Browser (UCSC)DBX2
Gene fusions - Rearrangements
Tumor Fusion PortalDBX2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDBX2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DBX2
dbVarDBX2
ClinVarDBX2
1000_GenomesDBX2 
Exome Variant ServerDBX2
ExAC (Exome Aggregation Consortium)ENSG00000185610
GNOMAD BrowserENSG00000185610
Genetic variants : HAPMAP440097
Genomic Variants (DGV)DBX2 [DGVbeta]
DECIPHERDBX2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDBX2 
Mutations
ICGC Data PortalDBX2 
TCGA Data PortalDBX2 
Broad Tumor PortalDBX2
OASIS PortalDBX2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDBX2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDBX2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DBX2
DgiDB (Drug Gene Interaction Database)DBX2
DoCM (Curated mutations)DBX2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DBX2 (select a term)
intoGenDBX2
Cancer3DDBX2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETDBX2
MedgenDBX2
Genetic Testing Registry DBX2
NextProtQ6ZNG2 [Medical]
TSGene440097
GENETestsDBX2
Target ValidationDBX2
Huge Navigator DBX2 [HugePedia]
snp3D : Map Gene to Disease440097
BioCentury BCIQDBX2
ClinGenDBX2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD440097
Chemical/Pharm GKB GenePA162383249
Clinical trialDBX2
Miscellaneous
canSAR (ICR)DBX2 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDBX2
EVEXDBX2
GoPubMedDBX2
iHOPDBX2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:10:01 CET 2017

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