Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

DCAF12 (DDB1 and CUL4 associated factor 12)

Identity

Alias_namesKIAA1892
WDR40A
KIAA1892
WD repeat domain 40A
Alias_symbol (synonym)DKFZP434O125
MGC1058
CT102
TCC52
Other alias
HGNC (Hugo) DCAF12
LocusID (NCBI) 25853
Atlas_Id 53342
Location 9p13.3  [Link to chromosome band 9p13]
Location_base_pair Starts at 34086381 and ends at 34126771 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
DCAF12 (9p13.3) / CNBD1 (8q21.3)UBAP2 (9p13.3) / DCAF12 (9p13.3)DCAF12 9p13.3 / CNBD1 8q21.3
UBAP2 9p13.3 / DCAF12 9p13.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DCAF12   19911
Cards
Entrez_Gene (NCBI)DCAF12  25853  DDB1 and CUL4 associated factor 12
AliasesCT102; KIAA1892; TCC52; WDR40A
GeneCards (Weizmann)DCAF12
Ensembl hg19 (Hinxton)ENSG00000198876 [Gene_View]  chr9:34086381-34126771 [Contig_View]  DCAF12 [Vega]
Ensembl hg38 (Hinxton)ENSG00000198876 [Gene_View]  chr9:34086381-34126771 [Contig_View]  DCAF12 [Vega]
ICGC DataPortalENSG00000198876
TCGA cBioPortalDCAF12
AceView (NCBI)DCAF12
Genatlas (Paris)DCAF12
WikiGenes25853
SOURCE (Princeton)DCAF12
Genetics Home Reference (NIH)DCAF12
Genomic and cartography
GoldenPath hg19 (UCSC)DCAF12  -     chr9:34086381-34126771 -  9p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)DCAF12  -     9p13.3   [Description]    (hg38-Dec_2013)
EnsemblDCAF12 - 9p13.3 [CytoView hg19]  DCAF12 - 9p13.3 [CytoView hg38]
Mapping of homologs : NCBIDCAF12 [Mapview hg19]  DCAF12 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB067479 AF085907 AF131771 AI140359 AK000354
RefSeq transcript (Entrez)NM_015397
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008413 NW_004929342
Consensus coding sequences : CCDS (NCBI)DCAF12
Cluster EST : UnigeneHs.741270 [ NCBI ]
CGAP (NCI)Hs.741270
Alternative Splicing GalleryENSG00000198876
Gene ExpressionDCAF12 [ NCBI-GEO ]   DCAF12 [ EBI - ARRAY_EXPRESS ]   DCAF12 [ SEEK ]   DCAF12 [ MEM ]
Gene Expression Viewer (FireBrowse)DCAF12 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25853
GTEX Portal (Tissue expression)DCAF12
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T6F0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T6F0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T6F0
Splice isoforms : SwissVarQ5T6F0
PhosPhoSitePlusQ5T6F0
Domaine pattern : Prosite (Expaxy)WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_CS    WD40_repeat_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)DCAF12
DMDM Disease mutations25853
Blocks (Seattle)DCAF12
PDB (SRS)3I7P   
PDB (PDBSum)3I7P   
PDB (IMB)3I7P   
PDB (RSDB)3I7P   
Structural Biology KnowledgeBase3I7P   
SCOP (Structural Classification of Proteins)3I7P   
CATH (Classification of proteins structures)3I7P   
SuperfamilyQ5T6F0
Human Protein AtlasENSG00000198876
Peptide AtlasQ5T6F0
HPRD10031
IPIIPI00411753   IPI00977928   IPI00642879   IPI00102550   
Protein Interaction databases
DIP (DOE-UCLA)Q5T6F0
IntAct (EBI)Q5T6F0
FunCoupENSG00000198876
BioGRIDDCAF12
STRING (EMBL)DCAF12
ZODIACDCAF12
Ontologies - Pathways
QuickGOQ5T6F0
Ontology : AmiGOcytoplasm  centrosome  protein ubiquitination  protein ubiquitination  Cul4-RING E3 ubiquitin ligase complex  
Ontology : EGO-EBIcytoplasm  centrosome  protein ubiquitination  protein ubiquitination  Cul4-RING E3 ubiquitin ligase complex  
NDEx NetworkDCAF12
Atlas of Cancer Signalling NetworkDCAF12
Wikipedia pathwaysDCAF12
Orthology - Evolution
OrthoDB25853
GeneTree (enSembl)ENSG00000198876
Phylogenetic Trees/Animal Genes : TreeFamDCAF12
HOVERGENQ5T6F0
HOGENOMQ5T6F0
Homologs : HomoloGeneDCAF12
Homology/Alignments : Family Browser (UCSC)DCAF12
Gene fusions - Rearrangements
Fusion : MitelmanDCAF12/CNBD1 [9p13.3/8q21.3]  
Fusion : MitelmanUBAP2/DCAF12 [9p13.3/9p13.3]  [t(9;9)(p13;p13)]  
Fusion: TCGADCAF12 9p13.3 CNBD1 8q21.3 BRCA
Fusion: TCGAUBAP2 9p13.3 DCAF12 9p13.3 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDCAF12 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DCAF12
dbVarDCAF12
ClinVarDCAF12
1000_GenomesDCAF12 
Exome Variant ServerDCAF12
ExAC (Exome Aggregation Consortium)DCAF12 (select the gene name)
Genetic variants : HAPMAP25853
Genomic Variants (DGV)DCAF12 [DGVbeta]
DECIPHER (Syndromes)9:34086381-34126771  ENSG00000198876
CONAN: Copy Number AnalysisDCAF12 
Mutations
ICGC Data PortalDCAF12 
TCGA Data PortalDCAF12 
Broad Tumor PortalDCAF12
OASIS PortalDCAF12 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDCAF12  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDCAF12
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DCAF12
DgiDB (Drug Gene Interaction Database)DCAF12
DoCM (Curated mutations)DCAF12 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DCAF12 (select a term)
intoGenDCAF12
Cancer3DDCAF12(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenDCAF12
Genetic Testing Registry DCAF12
NextProtQ5T6F0 [Medical]
TSGene25853
GENETestsDCAF12
Huge Navigator DCAF12 [HugePedia]
snp3D : Map Gene to Disease25853
BioCentury BCIQDCAF12
ClinGenDCAF12
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25853
Chemical/Pharm GKB GenePA165585735
Clinical trialDCAF12
Miscellaneous
canSAR (ICR)DCAF12 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDCAF12
EVEXDCAF12
GoPubMedDCAF12
iHOPDCAF12
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 30 14:58:27 CEST 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.