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DCAF12L1 (DDB1 and CUL4 associated factor 12 like 1)

Identity

Alias_namesWDR40B
WD repeat domain 40B
Alias_symbol (synonym)KIAA1892L
Other alias
HGNC (Hugo) DCAF12L1
LocusID (NCBI) 139170
Atlas_Id 62312
Location Xq25  [Link to chromosome band Xq25]
Location_base_pair Starts at 126549383 and ends at 126552859 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DCAF12L1   29395
Cards
Entrez_Gene (NCBI)DCAF12L1  139170  DDB1 and CUL4 associated factor 12 like 1
AliasesKIAA1892L; WDR40B
GeneCards (Weizmann)DCAF12L1
Ensembl hg19 (Hinxton)ENSG00000198889 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198889 [Gene_View]  chrX:126549383-126552859 [Contig_View]  DCAF12L1 [Vega]
ICGC DataPortalENSG00000198889
TCGA cBioPortalDCAF12L1
AceView (NCBI)DCAF12L1
Genatlas (Paris)DCAF12L1
WikiGenes139170
SOURCE (Princeton)DCAF12L1
Genetics Home Reference (NIH)DCAF12L1
Genomic and cartography
GoldenPath hg38 (UCSC)DCAF12L1  -     chrX:126549383-126552859 -  Xq25   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DCAF12L1  -     Xq25   [Description]    (hg19-Feb_2009)
EnsemblDCAF12L1 - Xq25 [CytoView hg19]  DCAF12L1 - Xq25 [CytoView hg38]
Mapping of homologs : NCBIDCAF12L1 [Mapview hg19]  DCAF12L1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI139786 BC035674 BM563914 DN999337
RefSeq transcript (Entrez)NM_178470
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DCAF12L1
Cluster EST : UnigeneHs.120403 [ NCBI ]
CGAP (NCI)Hs.120403
Alternative Splicing GalleryENSG00000198889
Gene ExpressionDCAF12L1 [ NCBI-GEO ]   DCAF12L1 [ EBI - ARRAY_EXPRESS ]   DCAF12L1 [ SEEK ]   DCAF12L1 [ MEM ]
Gene Expression Viewer (FireBrowse)DCAF12L1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)139170
GTEX Portal (Tissue expression)DCAF12L1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VU92   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VU92  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VU92
Splice isoforms : SwissVarQ5VU92
PhosPhoSitePlusQ5VU92
Domaine pattern : Prosite (Expaxy)WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)DCAF12L1
DMDM Disease mutations139170
Blocks (Seattle)DCAF12L1
SuperfamilyQ5VU92
Human Protein AtlasENSG00000198889
Peptide AtlasQ5VU92
HPRD06604
IPIIPI00217792   
Protein Interaction databases
DIP (DOE-UCLA)Q5VU92
IntAct (EBI)Q5VU92
FunCoupENSG00000198889
BioGRIDDCAF12L1
STRING (EMBL)DCAF12L1
ZODIACDCAF12L1
Ontologies - Pathways
QuickGOQ5VU92
Ontology : AmiGOmolecular_function  protein binding  cellular_component  biological_process  
Ontology : EGO-EBImolecular_function  protein binding  cellular_component  biological_process  
NDEx NetworkDCAF12L1
Atlas of Cancer Signalling NetworkDCAF12L1
Wikipedia pathwaysDCAF12L1
Orthology - Evolution
OrthoDB139170
GeneTree (enSembl)ENSG00000198889
Phylogenetic Trees/Animal Genes : TreeFamDCAF12L1
HOVERGENQ5VU92
HOGENOMQ5VU92
Homologs : HomoloGeneDCAF12L1
Homology/Alignments : Family Browser (UCSC)DCAF12L1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDCAF12L1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DCAF12L1
dbVarDCAF12L1
ClinVarDCAF12L1
1000_GenomesDCAF12L1 
Exome Variant ServerDCAF12L1
ExAC (Exome Aggregation Consortium)DCAF12L1 (select the gene name)
Genetic variants : HAPMAP139170
Genomic Variants (DGV)DCAF12L1 [DGVbeta]
DECIPHERDCAF12L1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDCAF12L1 
Mutations
ICGC Data PortalDCAF12L1 
TCGA Data PortalDCAF12L1 
Broad Tumor PortalDCAF12L1
OASIS PortalDCAF12L1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDCAF12L1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDCAF12L1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch DCAF12L1
DgiDB (Drug Gene Interaction Database)DCAF12L1
DoCM (Curated mutations)DCAF12L1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DCAF12L1 (select a term)
intoGenDCAF12L1
Cancer3DDCAF12L1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenDCAF12L1
Genetic Testing Registry DCAF12L1
NextProtQ5VU92 [Medical]
TSGene139170
GENETestsDCAF12L1
Target ValidationDCAF12L1
Huge Navigator DCAF12L1 [HugePedia]
snp3D : Map Gene to Disease139170
BioCentury BCIQDCAF12L1
ClinGenDCAF12L1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD139170
Chemical/Pharm GKB GenePA165756488
Clinical trialDCAF12L1
Miscellaneous
canSAR (ICR)DCAF12L1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDCAF12L1
EVEXDCAF12L1
GoPubMedDCAF12L1
iHOPDCAF12L1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:13:14 CEST 2017

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