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DCAF12L2 (DDB1 and CUL4 associated factor 12 like 2)

Identity

Alias_namesWDR40C
WD repeat domain 40C
Other alias
HGNC (Hugo) DCAF12L2
LocusID (NCBI) 340578
Atlas_Id 62313
Location Xq25  [Link to chromosome band Xq25]
Location_base_pair Starts at 126163499 and ends at 126166097 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DCAF12L2   32950
Cards
Entrez_Gene (NCBI)DCAF12L2  340578  DDB1 and CUL4 associated factor 12 like 2
AliasesWDR40C
GeneCards (Weizmann)DCAF12L2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chrX:126163499-126166097 [Contig_View]  DCAF12L2 [Vega]
TCGA cBioPortalDCAF12L2
AceView (NCBI)DCAF12L2
Genatlas (Paris)DCAF12L2
WikiGenes340578
SOURCE (Princeton)DCAF12L2
Genetics Home Reference (NIH)DCAF12L2
Genomic and cartography
GoldenPath hg38 (UCSC)DCAF12L2  -     chrX:126163499-126166097 -  Xq25   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DCAF12L2  -     Xq25   [Description]    (hg19-Feb_2009)
EnsemblDCAF12L2 - Xq25 [CytoView hg19]  DCAF12L2 - Xq25 [CytoView hg38]
Mapping of homologs : NCBIDCAF12L2 [Mapview hg19]  DCAF12L2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY726580 BC136673 BC136674
RefSeq transcript (Entrez)NM_001013628
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DCAF12L2
Cluster EST : UnigeneHs.181867 [ NCBI ]
CGAP (NCI)Hs.181867
Gene ExpressionDCAF12L2 [ NCBI-GEO ]   DCAF12L2 [ EBI - ARRAY_EXPRESS ]   DCAF12L2 [ SEEK ]   DCAF12L2 [ MEM ]
Gene Expression Viewer (FireBrowse)DCAF12L2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)340578
GTEX Portal (Tissue expression)DCAF12L2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VW00   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VW00  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VW00
Splice isoforms : SwissVarQ5VW00
PhosPhoSitePlusQ5VW00
Domaine pattern : Prosite (Expaxy)WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_dom   
Domain families : Pfam (Sanger)WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam00400   
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)DCAF12L2
DMDM Disease mutations340578
Blocks (Seattle)DCAF12L2
SuperfamilyQ5VW00
Peptide AtlasQ5VW00
HPRD15323
IPIIPI00232874   
Protein Interaction databases
DIP (DOE-UCLA)Q5VW00
IntAct (EBI)Q5VW00
BioGRIDDCAF12L2
STRING (EMBL)DCAF12L2
ZODIACDCAF12L2
Ontologies - Pathways
QuickGOQ5VW00
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkDCAF12L2
Atlas of Cancer Signalling NetworkDCAF12L2
Wikipedia pathwaysDCAF12L2
Orthology - Evolution
OrthoDB340578
Phylogenetic Trees/Animal Genes : TreeFamDCAF12L2
HOVERGENQ5VW00
HOGENOMQ5VW00
Homologs : HomoloGeneDCAF12L2
Homology/Alignments : Family Browser (UCSC)DCAF12L2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDCAF12L2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DCAF12L2
dbVarDCAF12L2
ClinVarDCAF12L2
1000_GenomesDCAF12L2 
Exome Variant ServerDCAF12L2
ExAC (Exome Aggregation Consortium)DCAF12L2 (select the gene name)
Genetic variants : HAPMAP340578
Genomic Variants (DGV)DCAF12L2 [DGVbeta]
DECIPHERDCAF12L2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDCAF12L2 
Mutations
ICGC Data PortalDCAF12L2 
TCGA Data PortalDCAF12L2 
Broad Tumor PortalDCAF12L2
OASIS PortalDCAF12L2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDCAF12L2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDCAF12L2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch DCAF12L2
DgiDB (Drug Gene Interaction Database)DCAF12L2
DoCM (Curated mutations)DCAF12L2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DCAF12L2 (select a term)
intoGenDCAF12L2
Cancer3DDCAF12L2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenDCAF12L2
Genetic Testing Registry DCAF12L2
NextProtQ5VW00 [Medical]
TSGene340578
GENETestsDCAF12L2
Target ValidationDCAF12L2
Huge Navigator DCAF12L2 [HugePedia]
snp3D : Map Gene to Disease340578
BioCentury BCIQDCAF12L2
ClinGenDCAF12L2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD340578
Chemical/Pharm GKB GenePA165756531
Clinical trialDCAF12L2
Miscellaneous
canSAR (ICR)DCAF12L2 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDCAF12L2
EVEXDCAF12L2
GoPubMedDCAF12L2
iHOPDCAF12L2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:45:18 CEST 2017

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