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DCAF15 (DDB1 and CUL4 associated factor 15)

Identity

Alias (NCBI)C19orf72
HGNC (Hugo) DCAF15
HGNC Alias symbMGC99481
HGNC Previous nameC19orf72
HGNC Previous namechromosome 19 open reading frame 72
LocusID (NCBI) 90379
Atlas_Id 62315
Location 19p13.12  [Link to chromosome band 19p13]
Location_base_pair Starts at 13952474 and ends at 13961449 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)DCAF15   25095
Cards
Entrez_Gene (NCBI)DCAF15    DDB1 and CUL4 associated factor 15
AliasesC19orf72
GeneCards (Weizmann)DCAF15
Ensembl hg19 (Hinxton)ENSG00000132017 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000132017 [Gene_View]  ENSG00000132017 [Sequence]  chr19:13952474-13961449 [Contig_View]  DCAF15 [Vega]
ICGC DataPortalENSG00000132017
TCGA cBioPortalDCAF15
AceView (NCBI)DCAF15
Genatlas (Paris)DCAF15
SOURCE (Princeton)DCAF15
Genetics Home Reference (NIH)DCAF15
Genomic and cartography
GoldenPath hg38 (UCSC)DCAF15  -     chr19:13952474-13961449 +  19p13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DCAF15  -     19p13.12   [Description]    (hg19-Feb_2009)
GoldenPathDCAF15 - 19p13.12 [CytoView hg19]  DCAF15 - 19p13.12 [CytoView hg38]
ImmunoBaseENSG00000132017
genome Data Viewer NCBIDCAF15 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK093072 BC002926 BC013280 BC018894 BC018895
RefSeq transcript (Entrez)NM_138353
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DCAF15
Alternative Splicing GalleryENSG00000132017
Gene ExpressionDCAF15 [ NCBI-GEO ]   DCAF15 [ EBI - ARRAY_EXPRESS ]   DCAF15 [ SEEK ]   DCAF15 [ MEM ]
Gene Expression Viewer (FireBrowse)DCAF15 [ Firebrowse - Broad ]
GenevisibleExpression of DCAF15 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90379
GTEX Portal (Tissue expression)DCAF15
Human Protein AtlasENSG00000132017-DCAF15 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ66K64   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ66K64  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ66K64
Splice isoforms : SwissVarQ66K64
PhosPhoSitePlusQ66K64
Domains : Interpro (EBI)DCAF15    DCAF15_WD40   
Domain families : Pfam (Sanger)DCAF15_WD40 (PF14939)   
Domain families : Pfam (NCBI)pfam14939   
Conserved Domain (NCBI)DCAF15
Blocks (Seattle)DCAF15
PDB (RSDB)6PAI   
PDB Europe6PAI   
PDB (PDBSum)6PAI   
PDB (IMB)6PAI   
Structural Biology KnowledgeBase6PAI   
SCOP (Structural Classification of Proteins)6PAI   
CATH (Classification of proteins structures)6PAI   
SuperfamilyQ66K64
Human Protein Atlas [tissue]ENSG00000132017-DCAF15 [tissue]
Peptide AtlasQ66K64
IPIIPI00470781   
Protein Interaction databases
DIP (DOE-UCLA)Q66K64
IntAct (EBI)Q66K64
BioGRIDDCAF15
STRING (EMBL)DCAF15
ZODIACDCAF15
Ontologies - Pathways
QuickGOQ66K64
Ontology : AmiGOprotein binding  protein ubiquitination  protein ubiquitination  protein ubiquitination  protein-containing complex  Cul4-RING E3 ubiquitin ligase complex  Cul4-RING E3 ubiquitin ligase complex  
Ontology : EGO-EBIprotein binding  protein ubiquitination  protein ubiquitination  protein ubiquitination  protein-containing complex  Cul4-RING E3 ubiquitin ligase complex  Cul4-RING E3 ubiquitin ligase complex  
NDEx NetworkDCAF15
Atlas of Cancer Signalling NetworkDCAF15
Wikipedia pathwaysDCAF15
Orthology - Evolution
OrthoDB90379
GeneTree (enSembl)ENSG00000132017
Phylogenetic Trees/Animal Genes : TreeFamDCAF15
HOGENOMQ66K64
Homologs : HomoloGeneDCAF15
Homology/Alignments : Family Browser (UCSC)DCAF15
Gene fusions - Rearrangements
Fusion : QuiverDCAF15
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDCAF15 [hg38]
dbVarDCAF15
ClinVarDCAF15
MonarchDCAF15
1000_GenomesDCAF15 
Exome Variant ServerDCAF15
GNOMAD BrowserENSG00000132017
Varsome BrowserDCAF15
Genomic Variants (DGV)DCAF15 [DGVbeta]
DECIPHERDCAF15 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDCAF15 
Mutations
ICGC Data PortalDCAF15 
TCGA Data PortalDCAF15 
Broad Tumor PortalDCAF15
OASIS PortalDCAF15 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDCAF15  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DDCAF15
Mutations and Diseases : HGMDDCAF15
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DCAF15
DgiDB (Drug Gene Interaction Database)DCAF15
DoCM (Curated mutations)DCAF15 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DCAF15 (select a term)
intoGenDCAF15
Cancer3DDCAF15(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETDCAF15
MedgenDCAF15
Genetic Testing Registry DCAF15
NextProtQ66K64 [Medical]
GENETestsDCAF15
Target ValidationDCAF15
Huge Navigator DCAF15 [HugePedia]
ClinGenDCAF15
Clinical trials, drugs, therapy
MyCancerGenomeDCAF15
Protein Interactions : CTD
Pharm GKB GenePA165393390
Clinical trialDCAF15
Miscellaneous
canSAR (ICR)DCAF15 (select the gene name)
HarmonizomeDCAF15
DataMed IndexDCAF15
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDCAF15
EVEXDCAF15
GoPubMedDCAF15
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 16:51:21 CET 2020
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