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DCAF16 (DDB1 and CUL4 associated factor 16)

Identity

Alias_namesC4orf30
chromosome 4 open reading frame 30
Alias_symbol (synonym)FLJ20280
Other alias
HGNC (Hugo) DCAF16
LocusID (NCBI) 54876
Atlas_Id 62316
Location 4p15.31  [Link to chromosome band 4p15]
Location_base_pair Starts at 17800655 and ends at 17810758 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CXCL14 (5q31.1) / DCAF16 (4p15.31)DCAF16 (4p15.31) / CXCL14 (5q31.1)DCAF16 (4p15.31) / GORAB (1q24.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DCAF16   25987
Cards
Entrez_Gene (NCBI)DCAF16  54876  DDB1 and CUL4 associated factor 16
AliasesC4orf30
GeneCards (Weizmann)DCAF16
Ensembl hg19 (Hinxton)ENSG00000163257 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163257 [Gene_View]  chr4:17800655-17810758 [Contig_View]  DCAF16 [Vega]
ICGC DataPortalENSG00000163257
TCGA cBioPortalDCAF16
AceView (NCBI)DCAF16
Genatlas (Paris)DCAF16
WikiGenes54876
SOURCE (Princeton)DCAF16
Genetics Home Reference (NIH)DCAF16
Genomic and cartography
GoldenPath hg38 (UCSC)DCAF16  -     chr4:17800655-17810758 -  4p15.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DCAF16  -     4p15.31   [Description]    (hg19-Feb_2009)
EnsemblDCAF16 - 4p15.31 [CytoView hg19]  DCAF16 - 4p15.31 [CytoView hg38]
Mapping of homologs : NCBIDCAF16 [Mapview hg19]  DCAF16 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK000287 AK056116 BC014536 BC050697 BC068025
RefSeq transcript (Entrez)NM_001345880 NM_001345881 NM_001345882 NM_001345884 NM_001345885 NM_017741
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DCAF16
Cluster EST : UnigeneHs.614787 [ NCBI ]
CGAP (NCI)Hs.614787
Alternative Splicing GalleryENSG00000163257
Gene ExpressionDCAF16 [ NCBI-GEO ]   DCAF16 [ EBI - ARRAY_EXPRESS ]   DCAF16 [ SEEK ]   DCAF16 [ MEM ]
Gene Expression Viewer (FireBrowse)DCAF16 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54876
GTEX Portal (Tissue expression)DCAF16
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NXF7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NXF7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NXF7
Splice isoforms : SwissVarQ9NXF7
PhosPhoSitePlusQ9NXF7
Domains : Interpro (EBI)DCAF16   
Domain families : Pfam (Sanger)DCA16 (PF15349)   
Domain families : Pfam (NCBI)pfam15349   
Conserved Domain (NCBI)DCAF16
DMDM Disease mutations54876
Blocks (Seattle)DCAF16
SuperfamilyQ9NXF7
Human Protein AtlasENSG00000163257
Peptide AtlasQ9NXF7
HPRD07891
IPIIPI00015609   
Protein Interaction databases
DIP (DOE-UCLA)Q9NXF7
IntAct (EBI)Q9NXF7
FunCoupENSG00000163257
BioGRIDDCAF16
STRING (EMBL)DCAF16
ZODIACDCAF16
Ontologies - Pathways
QuickGOQ9NXF7
Ontology : AmiGOprotein binding  protein ubiquitination  protein ubiquitination  Cul4-RING E3 ubiquitin ligase complex  
Ontology : EGO-EBIprotein binding  protein ubiquitination  protein ubiquitination  Cul4-RING E3 ubiquitin ligase complex  
NDEx NetworkDCAF16
Atlas of Cancer Signalling NetworkDCAF16
Wikipedia pathwaysDCAF16
Orthology - Evolution
OrthoDB54876
GeneTree (enSembl)ENSG00000163257
Phylogenetic Trees/Animal Genes : TreeFamDCAF16
HOVERGENQ9NXF7
HOGENOMQ9NXF7
Homologs : HomoloGeneDCAF16
Homology/Alignments : Family Browser (UCSC)DCAF16
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDCAF16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DCAF16
dbVarDCAF16
ClinVarDCAF16
1000_GenomesDCAF16 
Exome Variant ServerDCAF16
ExAC (Exome Aggregation Consortium)DCAF16 (select the gene name)
Genetic variants : HAPMAP54876
Genomic Variants (DGV)DCAF16 [DGVbeta]
DECIPHERDCAF16 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDCAF16 
Mutations
ICGC Data PortalDCAF16 
TCGA Data PortalDCAF16 
Broad Tumor PortalDCAF16
OASIS PortalDCAF16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDCAF16  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDCAF16
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DCAF16
DgiDB (Drug Gene Interaction Database)DCAF16
DoCM (Curated mutations)DCAF16 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DCAF16 (select a term)
intoGenDCAF16
Cancer3DDCAF16(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenDCAF16
Genetic Testing Registry DCAF16
NextProtQ9NXF7 [Medical]
TSGene54876
GENETestsDCAF16
Target ValidationDCAF16
Huge Navigator DCAF16 [HugePedia]
snp3D : Map Gene to Disease54876
BioCentury BCIQDCAF16
ClinGenDCAF16
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54876
Chemical/Pharm GKB GenePA165663579
Clinical trialDCAF16
Miscellaneous
canSAR (ICR)DCAF16 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDCAF16
EVEXDCAF16
GoPubMedDCAF16
iHOPDCAF16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:05:52 CEST 2017

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