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DCAF17 (DDB1 and CUL4 associated factor 17)

Identity

Alias_namesC2orf37
chromosome 2 open reading frame 37
Alias_symbol (synonym)FLJ13096
Other aliasC20orf37
HGNC (Hugo) DCAF17
LocusID (NCBI) 80067
Atlas_Id 62317
Location 2q31.1  [Link to chromosome band 2q31]
Location_base_pair Starts at 171434251 and ends at 171485052 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DCAF17   25784
Cards
Entrez_Gene (NCBI)DCAF17  80067  DDB1 and CUL4 associated factor 17
AliasesC20orf37; C2orf37
GeneCards (Weizmann)DCAF17
Ensembl hg19 (Hinxton)ENSG00000115827 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000115827 [Gene_View]  chr2:171434251-171485052 [Contig_View]  DCAF17 [Vega]
ICGC DataPortalENSG00000115827
TCGA cBioPortalDCAF17
AceView (NCBI)DCAF17
Genatlas (Paris)DCAF17
WikiGenes80067
SOURCE (Princeton)DCAF17
Genetics Home Reference (NIH)DCAF17
Genomic and cartography
GoldenPath hg38 (UCSC)DCAF17  -     chr2:171434251-171485052 +  2q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DCAF17  -     2q31.1   [Description]    (hg19-Feb_2009)
EnsemblDCAF17 - 2q31.1 [CytoView hg19]  DCAF17 - 2q31.1 [CytoView hg38]
Mapping of homologs : NCBIDCAF17 [Mapview hg19]  DCAF17 [Mapview hg38]
OMIM241080   612515   
Gene and transcription
Genbank (Entrez)AK021599 AK023158 AK126198 AK307877 BC120957
RefSeq transcript (Entrez)NM_001164821 NM_025000
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DCAF17
Cluster EST : UnigeneHs.659439 [ NCBI ]
CGAP (NCI)Hs.659439
Alternative Splicing GalleryENSG00000115827
Gene ExpressionDCAF17 [ NCBI-GEO ]   DCAF17 [ EBI - ARRAY_EXPRESS ]   DCAF17 [ SEEK ]   DCAF17 [ MEM ]
Gene Expression Viewer (FireBrowse)DCAF17 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80067
GTEX Portal (Tissue expression)DCAF17
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5H9S7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5H9S7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5H9S7
Splice isoforms : SwissVarQ5H9S7
PhosPhoSitePlusQ5H9S7
Domains : Interpro (EBI)DCAF17   
Domain families : Pfam (Sanger)DCAF17 (PF15802)   
Domain families : Pfam (NCBI)pfam15802   
Conserved Domain (NCBI)DCAF17
DMDM Disease mutations80067
Blocks (Seattle)DCAF17
SuperfamilyQ5H9S7
Human Protein AtlasENSG00000115827
Peptide AtlasQ5H9S7
HPRD08579
IPIIPI00017389   IPI00748551   IPI00947068   IPI00916286   IPI00916142   
Protein Interaction databases
DIP (DOE-UCLA)Q5H9S7
IntAct (EBI)Q5H9S7
FunCoupENSG00000115827
BioGRIDDCAF17
STRING (EMBL)DCAF17
ZODIACDCAF17
Ontologies - Pathways
QuickGOQ5H9S7
Ontology : AmiGOnucleoplasm  nucleolus  cytosol  integral component of membrane  protein ubiquitination  protein ubiquitination  Cul4-RING E3 ubiquitin ligase complex  
Ontology : EGO-EBInucleoplasm  nucleolus  cytosol  integral component of membrane  protein ubiquitination  protein ubiquitination  Cul4-RING E3 ubiquitin ligase complex  
NDEx NetworkDCAF17
Atlas of Cancer Signalling NetworkDCAF17
Wikipedia pathwaysDCAF17
Orthology - Evolution
OrthoDB80067
GeneTree (enSembl)ENSG00000115827
Phylogenetic Trees/Animal Genes : TreeFamDCAF17
HOVERGENQ5H9S7
HOGENOMQ5H9S7
Homologs : HomoloGeneDCAF17
Homology/Alignments : Family Browser (UCSC)DCAF17
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDCAF17 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DCAF17
dbVarDCAF17
ClinVarDCAF17
1000_GenomesDCAF17 
Exome Variant ServerDCAF17
ExAC (Exome Aggregation Consortium)DCAF17 (select the gene name)
Genetic variants : HAPMAP80067
Genomic Variants (DGV)DCAF17 [DGVbeta]
DECIPHERDCAF17 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDCAF17 
Mutations
ICGC Data PortalDCAF17 
TCGA Data PortalDCAF17 
Broad Tumor PortalDCAF17
OASIS PortalDCAF17 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDCAF17  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDCAF17
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DCAF17
DgiDB (Drug Gene Interaction Database)DCAF17
DoCM (Curated mutations)DCAF17 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DCAF17 (select a term)
intoGenDCAF17
Cancer3DDCAF17(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM241080    612515   
Orphanet3045   
MedgenDCAF17
Genetic Testing Registry DCAF17
NextProtQ5H9S7 [Medical]
TSGene80067
GENETestsDCAF17
Target ValidationDCAF17
Huge Navigator DCAF17 [HugePedia]
snp3D : Map Gene to Disease80067
BioCentury BCIQDCAF17
ClinGenDCAF17
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80067
Chemical/Pharm GKB GenePA165696520
Clinical trialDCAF17
Miscellaneous
canSAR (ICR)DCAF17 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDCAF17
EVEXDCAF17
GoPubMedDCAF17
iHOPDCAF17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:05:53 CEST 2017

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