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DCAF4 (DDB1 and CUL4 associated factor 4)

Identity

Alias_namesWDR21
WDR21A
WD repeat domain 21
WD repeat domain 21A
Alias_symbol (synonym)DKFZp434K114
Other alias
HGNC (Hugo) DCAF4
LocusID (NCBI) 26094
Atlas_Id 62318
Location 14q24.2  [Link to chromosome band 14q24]
Location_base_pair Starts at 72926332 and ends at 72959649 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DCAF4 (14q24.2) / DCAF4 (14q24.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DCAF4   20229
Cards
Entrez_Gene (NCBI)DCAF4  26094  DDB1 and CUL4 associated factor 4
AliasesWDR21; WDR21A
GeneCards (Weizmann)DCAF4
Ensembl hg19 (Hinxton)ENSG00000119599 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000119599 [Gene_View]  chr14:72926332-72959649 [Contig_View]  DCAF4 [Vega]
ICGC DataPortalENSG00000119599
TCGA cBioPortalDCAF4
AceView (NCBI)DCAF4
Genatlas (Paris)DCAF4
WikiGenes26094
SOURCE (Princeton)DCAF4
Genetics Home Reference (NIH)DCAF4
Genomic and cartography
GoldenPath hg38 (UCSC)DCAF4  -     chr14:72926332-72959649 +  14q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DCAF4  -     14q24.2   [Description]    (hg19-Feb_2009)
EnsemblDCAF4 - 14q24.2 [CytoView hg19]  DCAF4 - 14q24.2 [CytoView hg38]
Mapping of homologs : NCBIDCAF4 [Mapview hg19]  DCAF4 [Mapview hg38]
OMIM616372   
Gene and transcription
Genbank (Entrez)AK027745 AK297571 AK297742 AK300786 AK315499
RefSeq transcript (Entrez)NM_001163508 NM_001163509 NM_015604 NM_181340 NM_181341
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DCAF4
Cluster EST : UnigeneHs.331491 [ NCBI ]
CGAP (NCI)Hs.331491
Alternative Splicing GalleryENSG00000119599
Gene ExpressionDCAF4 [ NCBI-GEO ]   DCAF4 [ EBI - ARRAY_EXPRESS ]   DCAF4 [ SEEK ]   DCAF4 [ MEM ]
Gene Expression Viewer (FireBrowse)DCAF4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26094
GTEX Portal (Tissue expression)DCAF4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WV16   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WV16  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WV16
Splice isoforms : SwissVarQ8WV16
PhosPhoSitePlusQ8WV16
Domaine pattern : Prosite (Expaxy)WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)DCAF4
DMDM Disease mutations26094
Blocks (Seattle)DCAF4
PDB (SRS)3I8C   
PDB (PDBSum)3I8C   
PDB (IMB)3I8C   
PDB (RSDB)3I8C   
Structural Biology KnowledgeBase3I8C   
SCOP (Structural Classification of Proteins)3I8C   
CATH (Classification of proteins structures)3I8C   
SuperfamilyQ8WV16
Human Protein AtlasENSG00000119599
Peptide AtlasQ8WV16
HPRD15664
IPIIPI00385324   IPI00790322   IPI00943761   IPI00943790   IPI00967613   IPI00292674   IPI00941805   IPI00412449   
Protein Interaction databases
DIP (DOE-UCLA)Q8WV16
IntAct (EBI)Q8WV16
FunCoupENSG00000119599
BioGRIDDCAF4
STRING (EMBL)DCAF4
ZODIACDCAF4
Ontologies - Pathways
QuickGOQ8WV16
Ontology : AmiGOU5 snRNP  RNA splicing  protein ubiquitination  protein ubiquitination  precatalytic spliceosome  catalytic step 2 spliceosome  Cul4-RING E3 ubiquitin ligase complex  
Ontology : EGO-EBIU5 snRNP  RNA splicing  protein ubiquitination  protein ubiquitination  precatalytic spliceosome  catalytic step 2 spliceosome  Cul4-RING E3 ubiquitin ligase complex  
NDEx NetworkDCAF4
Atlas of Cancer Signalling NetworkDCAF4
Wikipedia pathwaysDCAF4
Orthology - Evolution
OrthoDB26094
GeneTree (enSembl)ENSG00000119599
Phylogenetic Trees/Animal Genes : TreeFamDCAF4
HOVERGENQ8WV16
HOGENOMQ8WV16
Homologs : HomoloGeneDCAF4
Homology/Alignments : Family Browser (UCSC)DCAF4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDCAF4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DCAF4
dbVarDCAF4
ClinVarDCAF4
1000_GenomesDCAF4 
Exome Variant ServerDCAF4
ExAC (Exome Aggregation Consortium)DCAF4 (select the gene name)
Genetic variants : HAPMAP26094
Genomic Variants (DGV)DCAF4 [DGVbeta]
DECIPHERDCAF4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDCAF4 
Mutations
ICGC Data PortalDCAF4 
TCGA Data PortalDCAF4 
Broad Tumor PortalDCAF4
OASIS PortalDCAF4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDCAF4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDCAF4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DCAF4
DgiDB (Drug Gene Interaction Database)DCAF4
DoCM (Curated mutations)DCAF4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DCAF4 (select a term)
intoGenDCAF4
Cancer3DDCAF4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616372   
Orphanet
MedgenDCAF4
Genetic Testing Registry DCAF4
NextProtQ8WV16 [Medical]
TSGene26094
GENETestsDCAF4
Target ValidationDCAF4
Huge Navigator DCAF4 [HugePedia]
snp3D : Map Gene to Disease26094
BioCentury BCIQDCAF4
ClinGenDCAF4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26094
Chemical/Pharm GKB GenePA165478762
Clinical trialDCAF4
Miscellaneous
canSAR (ICR)DCAF4 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDCAF4
EVEXDCAF4
GoPubMedDCAF4
iHOPDCAF4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:05:53 CEST 2017

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