Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

DCAF4L1 (DDB1 and CUL4 associated factor 4-like 1)

Identity

Alias_namesWDR21B
WD repeat domain 21B
Other alias
HGNC (Hugo) DCAF4L1
LocusID (NCBI) 285429
Atlas_Id 62319
Location 4p13  [Link to chromosome band 4p13]
Location_base_pair Starts at 41983713 and ends at 41988484 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
DCAF4L1 (4p13) / LOC100268168 (5q35.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DCAF4L1   27723
Cards
Entrez_Gene (NCBI)DCAF4L1  285429  DDB1 and CUL4 associated factor 4-like 1
AliasesWDR21B
GeneCards (Weizmann)DCAF4L1
Ensembl hg19 (Hinxton)ENSG00000182308 [Gene_View]  chr4:41983713-41988484 [Contig_View]  DCAF4L1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000182308 [Gene_View]  chr4:41983713-41988484 [Contig_View]  DCAF4L1 [Vega]
ICGC DataPortalENSG00000182308
TCGA cBioPortalDCAF4L1
AceView (NCBI)DCAF4L1
Genatlas (Paris)DCAF4L1
WikiGenes285429
SOURCE (Princeton)DCAF4L1
Genetics Home Reference (NIH)DCAF4L1
Genomic and cartography
GoldenPath hg19 (UCSC)DCAF4L1  -     chr4:41983713-41988484 +  4p13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)DCAF4L1  -     4p13   [Description]    (hg38-Dec_2013)
EnsemblDCAF4L1 - 4p13 [CytoView hg19]  DCAF4L1 - 4p13 [CytoView hg38]
Mapping of homologs : NCBIDCAF4L1 [Mapview hg19]  DCAF4L1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK122914 BC035027 BC052943 BC104224 BC104225
RefSeq transcript (Entrez)NM_001029955
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_006238 NW_004929317
Consensus coding sequences : CCDS (NCBI)DCAF4L1
Cluster EST : UnigeneHs.213307 [ NCBI ]
CGAP (NCI)Hs.213307
Alternative Splicing GalleryENSG00000182308
Gene ExpressionDCAF4L1 [ NCBI-GEO ]   DCAF4L1 [ EBI - ARRAY_EXPRESS ]   DCAF4L1 [ SEEK ]   DCAF4L1 [ MEM ]
Gene Expression Viewer (FireBrowse)DCAF4L1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)285429
GTEX Portal (Tissue expression)DCAF4L1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3SXM0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3SXM0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3SXM0
Splice isoforms : SwissVarQ3SXM0
PhosPhoSitePlusQ3SXM0
Domaine pattern : Prosite (Expaxy)WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_dom   
Domain families : Pfam (Sanger)WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam00400   
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)DCAF4L1
DMDM Disease mutations285429
Blocks (Seattle)DCAF4L1
SuperfamilyQ3SXM0
Human Protein AtlasENSG00000182308
Peptide AtlasQ3SXM0
HPRD18775
IPIIPI00295511   
Protein Interaction databases
DIP (DOE-UCLA)Q3SXM0
IntAct (EBI)Q3SXM0
FunCoupENSG00000182308
BioGRIDDCAF4L1
STRING (EMBL)DCAF4L1
ZODIACDCAF4L1
Ontologies - Pathways
QuickGOQ3SXM0
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkDCAF4L1
Atlas of Cancer Signalling NetworkDCAF4L1
Wikipedia pathwaysDCAF4L1
Orthology - Evolution
OrthoDB285429
GeneTree (enSembl)ENSG00000182308
Phylogenetic Trees/Animal Genes : TreeFamDCAF4L1
HOVERGENQ3SXM0
HOGENOMQ3SXM0
Homologs : HomoloGeneDCAF4L1
Homology/Alignments : Family Browser (UCSC)DCAF4L1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDCAF4L1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DCAF4L1
dbVarDCAF4L1
ClinVarDCAF4L1
1000_GenomesDCAF4L1 
Exome Variant ServerDCAF4L1
ExAC (Exome Aggregation Consortium)DCAF4L1 (select the gene name)
Genetic variants : HAPMAP285429
Genomic Variants (DGV)DCAF4L1 [DGVbeta]
DECIPHER (Syndromes)4:41983713-41988484  ENSG00000182308
CONAN: Copy Number AnalysisDCAF4L1 
Mutations
ICGC Data PortalDCAF4L1 
TCGA Data PortalDCAF4L1 
Broad Tumor PortalDCAF4L1
OASIS PortalDCAF4L1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDCAF4L1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDCAF4L1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DCAF4L1
DgiDB (Drug Gene Interaction Database)DCAF4L1
DoCM (Curated mutations)DCAF4L1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DCAF4L1 (select a term)
intoGenDCAF4L1
Cancer3DDCAF4L1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenDCAF4L1
Genetic Testing Registry DCAF4L1
NextProtQ3SXM0 [Medical]
TSGene285429
GENETestsDCAF4L1
Huge Navigator DCAF4L1 [HugePedia]
snp3D : Map Gene to Disease285429
BioCentury BCIQDCAF4L1
ClinGenDCAF4L1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD285429
Chemical/Pharm GKB GenePA165663611
Clinical trialDCAF4L1
Miscellaneous
canSAR (ICR)DCAF4L1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDCAF4L1
EVEXDCAF4L1
GoPubMedDCAF4L1
iHOPDCAF4L1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:01:06 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.