Atlas of Genetics and Cytogenetics in Oncology and Haematology


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DCAF4L2 (DDB1 and CUL4 associated factor 4 like 2)

Identity

Alias_namesWDR21C
WD repeat domain 21C
Other alias
HGNC (Hugo) DCAF4L2
LocusID (NCBI) 138009
Atlas_Id 62320
Location 8q21.3  [Link to chromosome band 8q21]
Location_base_pair Starts at 87870743 and ends at 87874068 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DCAF4L2   26657
Cards
Entrez_Gene (NCBI)DCAF4L2  138009  DDB1 and CUL4 associated factor 4 like 2
AliasesWDR21C
GeneCards (Weizmann)DCAF4L2
Ensembl hg19 (Hinxton)ENSG00000176566 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176566 [Gene_View]  chr8:87870743-87874068 [Contig_View]  DCAF4L2 [Vega]
ICGC DataPortalENSG00000176566
TCGA cBioPortalDCAF4L2
AceView (NCBI)DCAF4L2
Genatlas (Paris)DCAF4L2
WikiGenes138009
SOURCE (Princeton)DCAF4L2
Genetics Home Reference (NIH)DCAF4L2
Genomic and cartography
GoldenPath hg38 (UCSC)DCAF4L2  -     chr8:87870743-87874068 -  8q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DCAF4L2  -     8q21.3   [Description]    (hg19-Feb_2009)
EnsemblDCAF4L2 - 8q21.3 [CytoView hg19]  DCAF4L2 - 8q21.3 [CytoView hg38]
Mapping of homologs : NCBIDCAF4L2 [Mapview hg19]  DCAF4L2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK093094 AK097600 AL833507 BC035011 BC111778
RefSeq transcript (Entrez)NM_152418
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DCAF4L2
Cluster EST : UnigeneHs.371738 [ NCBI ]
CGAP (NCI)Hs.371738
Alternative Splicing GalleryENSG00000176566
Gene ExpressionDCAF4L2 [ NCBI-GEO ]   DCAF4L2 [ EBI - ARRAY_EXPRESS ]   DCAF4L2 [ SEEK ]   DCAF4L2 [ MEM ]
Gene Expression Viewer (FireBrowse)DCAF4L2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)138009
GTEX Portal (Tissue expression)DCAF4L2
Human Protein AtlasENSG00000176566-DCAF4L2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NA75   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NA75  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NA75
Splice isoforms : SwissVarQ8NA75
PhosPhoSitePlusQ8NA75
Domaine pattern : Prosite (Expaxy)WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_dom   
Domain families : Pfam (Sanger)WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam00400   
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)DCAF4L2
DMDM Disease mutations138009
Blocks (Seattle)DCAF4L2
SuperfamilyQ8NA75
Human Protein Atlas [tissue]ENSG00000176566-DCAF4L2 [tissue]
Peptide AtlasQ8NA75
HPRD08187
IPIIPI00167925   
Protein Interaction databases
DIP (DOE-UCLA)Q8NA75
IntAct (EBI)Q8NA75
FunCoupENSG00000176566
BioGRIDDCAF4L2
STRING (EMBL)DCAF4L2
ZODIACDCAF4L2
Ontologies - Pathways
QuickGOQ8NA75
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkDCAF4L2
Atlas of Cancer Signalling NetworkDCAF4L2
Wikipedia pathwaysDCAF4L2
Orthology - Evolution
OrthoDB138009
GeneTree (enSembl)ENSG00000176566
Phylogenetic Trees/Animal Genes : TreeFamDCAF4L2
HOVERGENQ8NA75
HOGENOMQ8NA75
Homologs : HomoloGeneDCAF4L2
Homology/Alignments : Family Browser (UCSC)DCAF4L2
Gene fusions - Rearrangements
Fusion: Tumor Portal DCAF4L2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDCAF4L2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DCAF4L2
dbVarDCAF4L2
ClinVarDCAF4L2
1000_GenomesDCAF4L2 
Exome Variant ServerDCAF4L2
ExAC (Exome Aggregation Consortium)ENSG00000176566
GNOMAD BrowserENSG00000176566
Genetic variants : HAPMAP138009
Genomic Variants (DGV)DCAF4L2 [DGVbeta]
DECIPHERDCAF4L2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDCAF4L2 
Mutations
ICGC Data PortalDCAF4L2 
TCGA Data PortalDCAF4L2 
Broad Tumor PortalDCAF4L2
OASIS PortalDCAF4L2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDCAF4L2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDCAF4L2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DCAF4L2
DgiDB (Drug Gene Interaction Database)DCAF4L2
DoCM (Curated mutations)DCAF4L2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DCAF4L2 (select a term)
intoGenDCAF4L2
Cancer3DDCAF4L2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenDCAF4L2
Genetic Testing Registry DCAF4L2
NextProtQ8NA75 [Medical]
TSGene138009
GENETestsDCAF4L2
Target ValidationDCAF4L2
Huge Navigator DCAF4L2 [HugePedia]
snp3D : Map Gene to Disease138009
BioCentury BCIQDCAF4L2
ClinGenDCAF4L2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD138009
Chemical/Pharm GKB GenePA165585467
Clinical trialDCAF4L2
Miscellaneous
canSAR (ICR)DCAF4L2 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDCAF4L2
EVEXDCAF4L2
GoPubMedDCAF4L2
iHOPDCAF4L2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:44:05 CET 2017

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