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DCAF8L2 (DDB1 and CUL4 associated factor 8 like 2)

Identity

Alias_namesWDR42C
WD repeat domain 42C
Other alias
HGNC (Hugo) DCAF8L2
LocusID (NCBI) 347442
Atlas_Id 62322
Location Xp21.3  [Link to chromosome band Xp21]
Location_base_pair Starts at 27746809 and ends at 27748821 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SKP1 (5q31.1) / DCAF8L2 (Xp21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DCAF8L2   31811
Cards
Entrez_Gene (NCBI)DCAF8L2  347442  DDB1 and CUL4 associated factor 8 like 2
AliasesWDR42C
GeneCards (Weizmann)DCAF8L2
Ensembl hg19 (Hinxton)ENSG00000189186 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000189186 [Gene_View]  chrX:27746809-27748821 [Contig_View]  DCAF8L2 [Vega]
ICGC DataPortalENSG00000189186
TCGA cBioPortalDCAF8L2
AceView (NCBI)DCAF8L2
Genatlas (Paris)DCAF8L2
WikiGenes347442
SOURCE (Princeton)DCAF8L2
Genetics Home Reference (NIH)DCAF8L2
Genomic and cartography
GoldenPath hg38 (UCSC)DCAF8L2  -     chrX:27746809-27748821 +  Xp21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DCAF8L2  -     Xp21.3   [Description]    (hg19-Feb_2009)
EnsemblDCAF8L2 - Xp21.3 [CytoView hg19]  DCAF8L2 - Xp21.3 [CytoView hg38]
Mapping of homologs : NCBIDCAF8L2 [Mapview hg19]  DCAF8L2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC157859
RefSeq transcript (Entrez)NM_001136533
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DCAF8L2
Cluster EST : UnigeneHs.720885 [ NCBI ]
CGAP (NCI)Hs.720885
Alternative Splicing GalleryENSG00000189186
Gene ExpressionDCAF8L2 [ NCBI-GEO ]   DCAF8L2 [ EBI - ARRAY_EXPRESS ]   DCAF8L2 [ SEEK ]   DCAF8L2 [ MEM ]
Gene Expression Viewer (FireBrowse)DCAF8L2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)347442
GTEX Portal (Tissue expression)DCAF8L2
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C7V8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C7V8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C7V8
Splice isoforms : SwissVarP0C7V8
PhosPhoSitePlusP0C7V8
Domaine pattern : Prosite (Expaxy)WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_dom   
Domain families : Pfam (Sanger)WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam00400   
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)DCAF8L2
DMDM Disease mutations347442
Blocks (Seattle)DCAF8L2
SuperfamilyP0C7V8
Human Protein AtlasENSG00000189186
Peptide AtlasP0C7V8
IPIIPI00232818   
Protein Interaction databases
DIP (DOE-UCLA)P0C7V8
IntAct (EBI)P0C7V8
FunCoupENSG00000189186
BioGRIDDCAF8L2
STRING (EMBL)DCAF8L2
ZODIACDCAF8L2
Ontologies - Pathways
QuickGOP0C7V8
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkDCAF8L2
Atlas of Cancer Signalling NetworkDCAF8L2
Wikipedia pathwaysDCAF8L2
Orthology - Evolution
OrthoDB347442
GeneTree (enSembl)ENSG00000189186
Phylogenetic Trees/Animal Genes : TreeFamDCAF8L2
HOVERGENP0C7V8
HOGENOMP0C7V8
Homologs : HomoloGeneDCAF8L2
Homology/Alignments : Family Browser (UCSC)DCAF8L2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDCAF8L2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DCAF8L2
dbVarDCAF8L2
ClinVarDCAF8L2
1000_GenomesDCAF8L2 
Exome Variant ServerDCAF8L2
ExAC (Exome Aggregation Consortium)DCAF8L2 (select the gene name)
Genetic variants : HAPMAP347442
Genomic Variants (DGV)DCAF8L2 [DGVbeta]
DECIPHERDCAF8L2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDCAF8L2 
Mutations
ICGC Data PortalDCAF8L2 
TCGA Data PortalDCAF8L2 
Broad Tumor PortalDCAF8L2
OASIS PortalDCAF8L2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDCAF8L2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDCAF8L2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DCAF8L2
DgiDB (Drug Gene Interaction Database)DCAF8L2
DoCM (Curated mutations)DCAF8L2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DCAF8L2 (select a term)
intoGenDCAF8L2
Cancer3DDCAF8L2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenDCAF8L2
Genetic Testing Registry DCAF8L2
NextProtP0C7V8 [Medical]
TSGene347442
GENETestsDCAF8L2
Target ValidationDCAF8L2
Huge Navigator DCAF8L2 [HugePedia]
snp3D : Map Gene to Disease347442
BioCentury BCIQDCAF8L2
ClinGenDCAF8L2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD347442
Chemical/Pharm GKB GenePA165756563
Clinical trialDCAF8L2
Miscellaneous
canSAR (ICR)DCAF8L2 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDCAF8L2
EVEXDCAF8L2
GoPubMedDCAF8L2
iHOPDCAF8L2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:05:53 CEST 2017

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