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DCANP1 (dendritic cell associated nuclear protein)

Identity

Alias_namesC5orf20
chromosome 5 open reading frame 20
Alias_symbol (synonym)DCNP1
Other alias
HGNC (Hugo) DCANP1
LocusID (NCBI) 140947
Atlas_Id 62324
Location 5q31.1  [Link to chromosome band 5q31]
Location_base_pair Starts at 135444214 and ends at 135447348 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DCANP1   24459
Cards
Entrez_Gene (NCBI)DCANP1  140947  dendritic cell associated nuclear protein
AliasesC5orf20; DCNP1
GeneCards (Weizmann)DCANP1
Ensembl hg19 (Hinxton)ENSG00000251380 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000251380 [Gene_View]  chr5:135444214-135447348 [Contig_View]  DCANP1 [Vega]
ICGC DataPortalENSG00000251380
TCGA cBioPortalDCANP1
AceView (NCBI)DCANP1
Genatlas (Paris)DCANP1
WikiGenes140947
SOURCE (Princeton)DCANP1
Genetics Home Reference (NIH)DCANP1
Genomic and cartography
GoldenPath hg38 (UCSC)DCANP1  -     chr5:135444214-135447348 -  5q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DCANP1  -     5q31.1   [Description]    (hg19-Feb_2009)
EnsemblDCANP1 - 5q31.1 [CytoView hg19]  DCANP1 - 5q31.1 [CytoView hg38]
Mapping of homologs : NCBIDCANP1 [Mapview hg19]  DCANP1 [Mapview hg38]
OMIM609710   
Gene and transcription
Genbank (Entrez)AB074498 BC069608 BC069610 BC074831 BC074832
RefSeq transcript (Entrez)NM_130848
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DCANP1
Cluster EST : UnigeneHs.152477 [ NCBI ]
CGAP (NCI)Hs.152477
Alternative Splicing GalleryENSG00000251380
Gene ExpressionDCANP1 [ NCBI-GEO ]   DCANP1 [ EBI - ARRAY_EXPRESS ]   DCANP1 [ SEEK ]   DCANP1 [ MEM ]
Gene Expression Viewer (FireBrowse)DCANP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)140947
GTEX Portal (Tissue expression)DCANP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TF63   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TF63  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TF63
Splice isoforms : SwissVarQ8TF63
PhosPhoSitePlusQ8TF63
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)DCANP1
DMDM Disease mutations140947
Blocks (Seattle)DCANP1
SuperfamilyQ8TF63
Human Protein AtlasENSG00000251380
Peptide AtlasQ8TF63
HPRD16786
IPIIPI00152869   
Protein Interaction databases
DIP (DOE-UCLA)Q8TF63
IntAct (EBI)Q8TF63
FunCoupENSG00000251380
BioGRIDDCANP1
STRING (EMBL)DCANP1
ZODIACDCANP1
Ontologies - Pathways
QuickGOQ8TF63
Ontology : AmiGODNA binding  protein binding  nucleus  cytoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  thorax and anterior abdomen determination  trigeminal nerve development  vestibulocochlear nerve formation  peristalsis  auditory behavior  genitalia morphogenesis  inner ear morphogenesis  regulation of muscle organ development  genitalia development  inner ear development  neuromuscular process controlling balance  palate development  mastication  cochlea development  cochlea morphogenesis  craniofacial suture morphogenesis  learned vocalization behavior  negative regulation of relaxation of muscle  negative regulation of saliva secretion  hard palate morphogenesis  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  cytoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  thorax and anterior abdomen determination  trigeminal nerve development  vestibulocochlear nerve formation  peristalsis  auditory behavior  genitalia morphogenesis  inner ear morphogenesis  regulation of muscle organ development  genitalia development  inner ear development  neuromuscular process controlling balance  palate development  mastication  cochlea development  cochlea morphogenesis  craniofacial suture morphogenesis  learned vocalization behavior  negative regulation of relaxation of muscle  negative regulation of saliva secretion  hard palate morphogenesis  
NDEx NetworkDCANP1
Atlas of Cancer Signalling NetworkDCANP1
Wikipedia pathwaysDCANP1
Orthology - Evolution
OrthoDB140947
GeneTree (enSembl)ENSG00000251380
Phylogenetic Trees/Animal Genes : TreeFamDCANP1
HOVERGENQ8TF63
HOGENOMQ8TF63
Homologs : HomoloGeneDCANP1
Homology/Alignments : Family Browser (UCSC)DCANP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDCANP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DCANP1
dbVarDCANP1
ClinVarDCANP1
1000_GenomesDCANP1 
Exome Variant ServerDCANP1
ExAC (Exome Aggregation Consortium)DCANP1 (select the gene name)
Genetic variants : HAPMAP140947
Genomic Variants (DGV)DCANP1 [DGVbeta]
DECIPHERDCANP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDCANP1 
Mutations
ICGC Data PortalDCANP1 
TCGA Data PortalDCANP1 
Broad Tumor PortalDCANP1
OASIS PortalDCANP1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDDCANP1
BioMutasearch DCANP1
DgiDB (Drug Gene Interaction Database)DCANP1
DoCM (Curated mutations)DCANP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DCANP1 (select a term)
intoGenDCANP1
Cancer3DDCANP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609710   
Orphanet
MedgenDCANP1
Genetic Testing Registry DCANP1
NextProtQ8TF63 [Medical]
TSGene140947
GENETestsDCANP1
Target ValidationDCANP1
Huge Navigator DCANP1 [HugePedia]
snp3D : Map Gene to Disease140947
BioCentury BCIQDCANP1
ClinGenDCANP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD140947
Chemical/Pharm GKB GenePA142672373
Clinical trialDCANP1
Miscellaneous
canSAR (ICR)DCANP1 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDCANP1
EVEXDCANP1
GoPubMedDCANP1
iHOPDCANP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:05:54 CEST 2017

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