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DCBLD1 (discoidin, CUB and LCCL domain containing 1)

Identity

Other aliasdJ94G16.1
HGNC (Hugo) DCBLD1
LocusID (NCBI) 285761
Atlas_Id 57202
Location 6q22.1  [Link to chromosome band 6q22]
Location_base_pair Starts at 117482604 and ends at 117569857 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PREP (6q21) / DCBLD1 (6q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(6;6)(q21;q22) PREP/DCBLD1


External links

Nomenclature
HGNC (Hugo)DCBLD1   21479
Cards
Entrez_Gene (NCBI)DCBLD1  285761  discoidin, CUB and LCCL domain containing 1
AliasesdJ94G16.1
GeneCards (Weizmann)DCBLD1
Ensembl hg19 (Hinxton)ENSG00000164465 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164465 [Gene_View]  ENSG00000164465 [Sequence]  chr6:117482604-117569857 [Contig_View]  DCBLD1 [Vega]
ICGC DataPortalENSG00000164465
TCGA cBioPortalDCBLD1
AceView (NCBI)DCBLD1
Genatlas (Paris)DCBLD1
WikiGenes285761
SOURCE (Princeton)DCBLD1
Genetics Home Reference (NIH)DCBLD1
Genomic and cartography
GoldenPath hg38 (UCSC)DCBLD1  -     chr6:117482604-117569857 +  6q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DCBLD1  -     6q22.1   [Description]    (hg19-Feb_2009)
EnsemblDCBLD1 - 6q22.1 [CytoView hg19]  DCBLD1 - 6q22.1 [CytoView hg38]
Mapping of homologs : NCBIDCBLD1 [Mapview hg19]  DCBLD1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ420528 AJ420597 AK055462 AK095973 AK098194
RefSeq transcript (Entrez)NM_001366458 NM_001366459 NM_001366460 NM_173674
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DCBLD1
Cluster EST : UnigeneHs.658304 [ NCBI ]
CGAP (NCI)Hs.658304
Alternative Splicing GalleryENSG00000164465
Gene ExpressionDCBLD1 [ NCBI-GEO ]   DCBLD1 [ EBI - ARRAY_EXPRESS ]   DCBLD1 [ SEEK ]   DCBLD1 [ MEM ]
Gene Expression Viewer (FireBrowse)DCBLD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)285761
GTEX Portal (Tissue expression)DCBLD1
Human Protein AtlasENSG00000164465-DCBLD1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N8Z6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N8Z6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N8Z6
Splice isoforms : SwissVarQ8N8Z6
PhosPhoSitePlusQ8N8Z6
Domaine pattern : Prosite (Expaxy)CUB (PS01180)    FA58C_1 (PS01285)    FA58C_3 (PS50022)    LCCL (PS50820)   
Domains : Interpro (EBI)CUB_dom    FA58C    Galactose-bd-like_sf    LCCL    LCCL_sf    Sperma_CUB_dom_sf   
Domain families : Pfam (Sanger)CUB (PF00431)    F5_F8_type_C (PF00754)    LCCL (PF03815)   
Domain families : Pfam (NCBI)pfam00431    pfam00754    pfam03815   
Domain families : Smart (EMBL)CUB (SM00042)  FA58C (SM00231)  LCCL (SM00603)  
Conserved Domain (NCBI)DCBLD1
DMDM Disease mutations285761
Blocks (Seattle)DCBLD1
SuperfamilyQ8N8Z6
Human Protein Atlas [tissue]ENSG00000164465-DCBLD1 [tissue]
Peptide AtlasQ8N8Z6
IPIIPI00337612   IPI00872383   IPI00873373   IPI00550954   IPI00974570   
Protein Interaction databases
DIP (DOE-UCLA)Q8N8Z6
IntAct (EBI)Q8N8Z6
FunCoupENSG00000164465
BioGRIDDCBLD1
STRING (EMBL)DCBLD1
ZODIACDCBLD1
Ontologies - Pathways
QuickGOQ8N8Z6
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkDCBLD1
Atlas of Cancer Signalling NetworkDCBLD1
Wikipedia pathwaysDCBLD1
Orthology - Evolution
OrthoDB285761
GeneTree (enSembl)ENSG00000164465
Phylogenetic Trees/Animal Genes : TreeFamDCBLD1
HOVERGENQ8N8Z6
HOGENOMQ8N8Z6
Homologs : HomoloGeneDCBLD1
Homology/Alignments : Family Browser (UCSC)DCBLD1
Gene fusions - Rearrangements
Fusion : QuiverDCBLD1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDCBLD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DCBLD1
dbVarDCBLD1
ClinVarDCBLD1
1000_GenomesDCBLD1 
Exome Variant ServerDCBLD1
ExAC (Exome Aggregation Consortium)ENSG00000164465
GNOMAD BrowserENSG00000164465
Varsome BrowserDCBLD1
Genetic variants : HAPMAP285761
Genomic Variants (DGV)DCBLD1 [DGVbeta]
DECIPHERDCBLD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDCBLD1 
Mutations
ICGC Data PortalDCBLD1 
TCGA Data PortalDCBLD1 
Broad Tumor PortalDCBLD1
OASIS PortalDCBLD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDCBLD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDCBLD1
BioMutasearch DCBLD1
DgiDB (Drug Gene Interaction Database)DCBLD1
DoCM (Curated mutations)DCBLD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DCBLD1 (select a term)
intoGenDCBLD1
Cancer3DDCBLD1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETDCBLD1
MedgenDCBLD1
Genetic Testing Registry DCBLD1
NextProtQ8N8Z6 [Medical]
TSGene285761
GENETestsDCBLD1
Target ValidationDCBLD1
Huge Navigator DCBLD1 [HugePedia]
snp3D : Map Gene to Disease285761
BioCentury BCIQDCBLD1
ClinGenDCBLD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD285761
Chemical/Pharm GKB GenePA134903108
Clinical trialDCBLD1
Miscellaneous
canSAR (ICR)DCBLD1 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDCBLD1
EVEXDCBLD1
GoPubMedDCBLD1
iHOPDCBLD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 6 11:01:42 CET 2018

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