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DCBLD2 (discoidin, CUB and LCCL domain containing 2)

Identity

Alias (NCBI)CLCP1
ESDN
HGNC (Hugo) DCBLD2
HGNC Alias symbCLCP1
ESDN
LocusID (NCBI) 131566
Atlas_Id 40498
Location 3q12.1  [Link to chromosome band 3q12]
Location_base_pair Starts at 98795941 and ends at 98901695 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DCBLD2 (3q12.1)::PATJ (1p31.3)DCBLD2 (3q12.1)::ST3GAL6 (3q12.1)DCBLD2 (3q12.1)::STXBP5L (3q13.33)
DCBLD2 (3q12.1)::TXNRD3 (3q21.3)LGALS3BP (17q25.3)::DCBLD2 (3q12.1)DCBLD2 3q12.1::ST3GAL6 3q12.1
LGALS3BP 17q25.3::DCBLD2 3q12.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)DCBLD2   24627
Cards
Entrez_Gene (NCBI)DCBLD2    discoidin, CUB and LCCL domain containing 2
AliasesCLCP1; ESDN
GeneCards (Weizmann)DCBLD2
Ensembl hg19 (Hinxton)ENSG00000057019 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000057019 [Gene_View]  ENSG00000057019 [Sequence]  chr3:98795941-98901695 [Contig_View]  DCBLD2 [Vega]
ICGC DataPortalENSG00000057019
TCGA cBioPortalDCBLD2
AceView (NCBI)DCBLD2
Genatlas (Paris)DCBLD2
SOURCE (Princeton)DCBLD2
Genetics Home Reference (NIH)DCBLD2
Genomic and cartography
GoldenPath hg38 (UCSC)DCBLD2  -     chr3:98795941-98901695 -  3q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DCBLD2  -     3q12.1   [Description]    (hg19-Feb_2009)
GoldenPathDCBLD2 - 3q12.1 [CytoView hg19]  DCBLD2 - 3q12.1 [CytoView hg38]
ImmunoBaseENSG00000057019
Genome Data Viewer NCBIDCBLD2 [Mapview hg19]  
OMIM608698   
Gene and transcription
Genbank (Entrez)AB073146 AF104313 AF387547 AK001362 AK056350
RefSeq transcript (Entrez)NM_080927
Consensus coding sequences : CCDS (NCBI)DCBLD2
Gene ExpressionDCBLD2 [ NCBI-GEO ]   DCBLD2 [ EBI - ARRAY_EXPRESS ]   DCBLD2 [ SEEK ]   DCBLD2 [ MEM ]
Gene Expression Viewer (FireBrowse)DCBLD2 [ Firebrowse - Broad ]
GenevisibleExpression of DCBLD2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)131566
GTEX Portal (Tissue expression)DCBLD2
Human Protein AtlasENSG00000057019-DCBLD2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96PD2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96PD2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96PD2
PhosPhoSitePlusQ96PD2
Domaine pattern : Prosite (Expaxy)CUB (PS01180)    FA58C_1 (PS01285)    FA58C_3 (PS50022)    LCCL (PS50820)   
Domains : Interpro (EBI)CUB_dom    FA58C    Galactose-bd-like_sf    LCCL    LCCL_sf    Sperma_CUB_dom_sf   
Domain families : Pfam (Sanger)CUB (PF00431)    F5_F8_type_C (PF00754)    LCCL (PF03815)   
Domain families : Pfam (NCBI)pfam00431    pfam00754    pfam03815   
Domain families : Smart (EMBL)CUB (SM00042)  FA58C (SM00231)  LCCL (SM00603)  
Conserved Domain (NCBI)DCBLD2
SuperfamilyQ96PD2
AlphaFold pdb e-kbQ96PD2   
Human Protein Atlas [tissue]ENSG00000057019-DCBLD2 [tissue]
HPRD10567
Protein Interaction databases
DIP (DOE-UCLA)Q96PD2
IntAct (EBI)Q96PD2
BioGRIDDCBLD2
STRING (EMBL)DCBLD2
ZODIACDCBLD2
Ontologies - Pathways
QuickGOQ96PD2
Ontology : AmiGOprotein binding  integral component of plasma membrane  cell surface  negative regulation of cell growth  intracellular receptor signaling pathway  wound healing  
Ontology : EGO-EBIprotein binding  integral component of plasma membrane  cell surface  negative regulation of cell growth  intracellular receptor signaling pathway  wound healing  
NDEx NetworkDCBLD2
Atlas of Cancer Signalling NetworkDCBLD2
Wikipedia pathwaysDCBLD2
Orthology - Evolution
OrthoDB131566
GeneTree (enSembl)ENSG00000057019
Phylogenetic Trees/Animal Genes : TreeFamDCBLD2
Homologs : HomoloGeneDCBLD2
Homology/Alignments : Family Browser (UCSC)DCBLD2
Gene fusions - Rearrangements
Fusion : MitelmanDCBLD2::ST3GAL6 [3q12.1/3q12.1]  
Fusion : MitelmanLGALS3BP::DCBLD2 [17q25.3/3q12.1]  
Fusion : QuiverDCBLD2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDCBLD2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DCBLD2
dbVarDCBLD2
ClinVarDCBLD2
MonarchDCBLD2
1000_GenomesDCBLD2 
Exome Variant ServerDCBLD2
GNOMAD BrowserENSG00000057019
Varsome BrowserDCBLD2
ACMGDCBLD2 variants
VarityQ96PD2
Genomic Variants (DGV)DCBLD2 [DGVbeta]
DECIPHERDCBLD2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDCBLD2 
Mutations
ICGC Data PortalDCBLD2 
TCGA Data PortalDCBLD2 
Broad Tumor PortalDCBLD2
OASIS PortalDCBLD2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDCBLD2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DDCBLD2
Mutations and Diseases : HGMDDCBLD2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaDCBLD2
DgiDB (Drug Gene Interaction Database)DCBLD2
DoCM (Curated mutations)DCBLD2
CIViC (Clinical Interpretations of Variants in Cancer)DCBLD2
Cancer3DDCBLD2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608698   
Orphanet
DisGeNETDCBLD2
MedgenDCBLD2
Genetic Testing Registry DCBLD2
NextProtQ96PD2 [Medical]
GENETestsDCBLD2
Target ValidationDCBLD2
Huge Navigator DCBLD2 [HugePedia]
ClinGenDCBLD2
Clinical trials, drugs, therapy
MyCancerGenomeDCBLD2
Protein Interactions : CTDDCBLD2
Pharm GKB GenePA134869307
PharosQ96PD2
Clinical trialDCBLD2
Miscellaneous
canSAR (ICR)DCBLD2
HarmonizomeDCBLD2
ARCHS4DCBLD2
DataMed IndexDCBLD2
Probes
Litterature
PubMed40 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXDCBLD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jan 20 12:30:02 CET 2022

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