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DCBLD2 (discoidin, CUB and LCCL domain containing 2)

Identity

Alias_symbol (synonym)CLCP1
ESDN
Other alias
HGNC (Hugo) DCBLD2
LocusID (NCBI) 131566
Atlas_Id 40498
Location 3q12.1  [Link to chromosome band 3q12]
Location_base_pair Starts at 98795970 and ends at 98901689 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DCBLD2 (3q12.1) / PATJ (1p31.3)DCBLD2 (3q12.1) / ST3GAL6 (3q12.1)DCBLD2 (3q12.1) / STXBP5L (3q13.33)
DCBLD2 (3q12.1) / TXNRD3 (3q21.3)LGALS3BP (17q25.3) / DCBLD2 (3q12.1)DCBLD2 3q12.1 / ST3GAL6 3q12.1
LGALS3BP 17q25.3 / DCBLD2 3q12.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DCBLD2   24627
Cards
Entrez_Gene (NCBI)DCBLD2  131566  discoidin, CUB and LCCL domain containing 2
AliasesCLCP1; ESDN
GeneCards (Weizmann)DCBLD2
Ensembl hg19 (Hinxton)ENSG00000057019 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000057019 [Gene_View]  chr3:98795970-98901689 [Contig_View]  DCBLD2 [Vega]
ICGC DataPortalENSG00000057019
TCGA cBioPortalDCBLD2
AceView (NCBI)DCBLD2
Genatlas (Paris)DCBLD2
WikiGenes131566
SOURCE (Princeton)DCBLD2
Genetics Home Reference (NIH)DCBLD2
Genomic and cartography
GoldenPath hg38 (UCSC)DCBLD2  -     chr3:98795970-98901689 -  3q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DCBLD2  -     3q12.1   [Description]    (hg19-Feb_2009)
EnsemblDCBLD2 - 3q12.1 [CytoView hg19]  DCBLD2 - 3q12.1 [CytoView hg38]
Mapping of homologs : NCBIDCBLD2 [Mapview hg19]  DCBLD2 [Mapview hg38]
OMIM608698   
Gene and transcription
Genbank (Entrez)AB073146 AF104313 AF387547 AK001362 AK056350
RefSeq transcript (Entrez)NM_080927
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DCBLD2
Cluster EST : UnigeneHs.203691 [ NCBI ]
CGAP (NCI)Hs.203691
Alternative Splicing GalleryENSG00000057019
Gene ExpressionDCBLD2 [ NCBI-GEO ]   DCBLD2 [ EBI - ARRAY_EXPRESS ]   DCBLD2 [ SEEK ]   DCBLD2 [ MEM ]
Gene Expression Viewer (FireBrowse)DCBLD2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)131566
GTEX Portal (Tissue expression)DCBLD2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96PD2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96PD2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96PD2
Splice isoforms : SwissVarQ96PD2
PhosPhoSitePlusQ96PD2
Domaine pattern : Prosite (Expaxy)CUB (PS01180)    FA58C_1 (PS01285)    FA58C_3 (PS50022)    LCCL (PS50820)   
Domains : Interpro (EBI)CUB_dom    FA58C    Galactose-bd-like    LCCL   
Domain families : Pfam (Sanger)CUB (PF00431)    F5_F8_type_C (PF00754)    LCCL (PF03815)   
Domain families : Pfam (NCBI)pfam00431    pfam00754    pfam03815   
Domain families : Smart (EMBL)CUB (SM00042)  FA58C (SM00231)  LCCL (SM00603)  
Conserved Domain (NCBI)DCBLD2
DMDM Disease mutations131566
Blocks (Seattle)DCBLD2
SuperfamilyQ96PD2
Human Protein AtlasENSG00000057019
Peptide AtlasQ96PD2
HPRD10567
IPIIPI00419836   IPI00433138   IPI00185191   IPI00382681   IPI00816441   IPI00793031   
Protein Interaction databases
DIP (DOE-UCLA)Q96PD2
IntAct (EBI)Q96PD2
FunCoupENSG00000057019
BioGRIDDCBLD2
STRING (EMBL)DCBLD2
ZODIACDCBLD2
Ontologies - Pathways
QuickGOQ96PD2
Ontology : AmiGOprotein binding  integral component of plasma membrane  cell surface  negative regulation of cell growth  intracellular receptor signaling pathway  wound healing  
Ontology : EGO-EBIprotein binding  integral component of plasma membrane  cell surface  negative regulation of cell growth  intracellular receptor signaling pathway  wound healing  
NDEx NetworkDCBLD2
Atlas of Cancer Signalling NetworkDCBLD2
Wikipedia pathwaysDCBLD2
Orthology - Evolution
OrthoDB131566
GeneTree (enSembl)ENSG00000057019
Phylogenetic Trees/Animal Genes : TreeFamDCBLD2
HOVERGENQ96PD2
HOGENOMQ96PD2
Homologs : HomoloGeneDCBLD2
Homology/Alignments : Family Browser (UCSC)DCBLD2
Gene fusions - Rearrangements
Fusion : MitelmanDCBLD2/ST3GAL6 [3q12.1/3q12.1]  
Fusion : MitelmanLGALS3BP/DCBLD2 [17q25.3/3q12.1]  [t(3;17)(q12;q25)]  
Fusion: TCGADCBLD2 3q12.1 ST3GAL6 3q12.1 LUAD
Fusion: TCGALGALS3BP 17q25.3 DCBLD2 3q12.1 SKCM
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDCBLD2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DCBLD2
dbVarDCBLD2
ClinVarDCBLD2
1000_GenomesDCBLD2 
Exome Variant ServerDCBLD2
ExAC (Exome Aggregation Consortium)DCBLD2 (select the gene name)
Genetic variants : HAPMAP131566
Genomic Variants (DGV)DCBLD2 [DGVbeta]
DECIPHERDCBLD2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDCBLD2 
Mutations
ICGC Data PortalDCBLD2 
TCGA Data PortalDCBLD2 
Broad Tumor PortalDCBLD2
OASIS PortalDCBLD2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDCBLD2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDCBLD2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DCBLD2
DgiDB (Drug Gene Interaction Database)DCBLD2
DoCM (Curated mutations)DCBLD2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DCBLD2 (select a term)
intoGenDCBLD2
Cancer3DDCBLD2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608698   
Orphanet
MedgenDCBLD2
Genetic Testing Registry DCBLD2
NextProtQ96PD2 [Medical]
TSGene131566
GENETestsDCBLD2
Target ValidationDCBLD2
Huge Navigator DCBLD2 [HugePedia]
snp3D : Map Gene to Disease131566
BioCentury BCIQDCBLD2
ClinGenDCBLD2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD131566
Chemical/Pharm GKB GenePA134869307
Clinical trialDCBLD2
Miscellaneous
canSAR (ICR)DCBLD2 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDCBLD2
EVEXDCBLD2
GoPubMedDCBLD2
iHOPDCBLD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:30:40 CEST 2017

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