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DCD (dermcidin)

Identity

Alias_symbol (synonym)AIDD
PIF
DSEP
HCAP
DCD-1
Other alias
HGNC (Hugo) DCD
LocusID (NCBI) 117159
Atlas_Id 46314
Location 12q13.2  [Link to chromosome band 12q13]
Location_base_pair Starts at 55038375 and ends at 55042277 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DCD   14669
Cards
Entrez_Gene (NCBI)DCD  117159  dermcidin
AliasesAIDD; DCD-1; DSEP; HCAP; 
PIF
GeneCards (Weizmann)DCD
Ensembl hg19 (Hinxton)ENSG00000161634 [Gene_View]  chr12:55038375-55042277 [Contig_View]  DCD [Vega]
Ensembl hg38 (Hinxton)ENSG00000161634 [Gene_View]  chr12:55038375-55042277 [Contig_View]  DCD [Vega]
ICGC DataPortalENSG00000161634
TCGA cBioPortalDCD
AceView (NCBI)DCD
Genatlas (Paris)DCD
WikiGenes117159
SOURCE (Princeton)DCD
Genetics Home Reference (NIH)DCD
Genomic and cartography
GoldenPath hg19 (UCSC)DCD  -     chr12:55038375-55042277 -  12q13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)DCD  -     12q13.2   [Description]    (hg38-Dec_2013)
EnsemblDCD - 12q13.2 [CytoView hg19]  DCD - 12q13.2 [CytoView hg38]
Mapping of homologs : NCBIDCD [Mapview hg19]  DCD [Mapview hg38]
OMIM606634   
Gene and transcription
Genbank (Entrez)AF144011 AY590150 BC062682 BC069108 BP313072
RefSeq transcript (Entrez)NM_001300854 NM_053283
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_029419 NW_004929384
Consensus coding sequences : CCDS (NCBI)DCD
Cluster EST : UnigeneHs.350570 [ NCBI ]
CGAP (NCI)Hs.350570
Alternative Splicing GalleryENSG00000161634
Gene ExpressionDCD [ NCBI-GEO ]   DCD [ EBI - ARRAY_EXPRESS ]   DCD [ SEEK ]   DCD [ MEM ]
Gene Expression Viewer (FireBrowse)DCD [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)117159
GTEX Portal (Tissue expression)DCD
Protein : pattern, domain, 3D structure
UniProt/SwissProtP81605   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP81605  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP81605
Splice isoforms : SwissVarP81605
Catalytic activity : Enzyme3.4.-.- [ Enzyme-Expasy ]   3.4.-.-3.4.-.- [ IntEnz-EBI ]   3.4.-.- [ BRENDA ]   3.4.-.- [ KEGG ]   
PhosPhoSitePlusP81605
Domains : Interpro (EBI)Dermcidin   
Domain families : Pfam (Sanger)Dermcidin (PF15291)   
Domain families : Pfam (NCBI)pfam15291   
Conserved Domain (NCBI)DCD
DMDM Disease mutations117159
Blocks (Seattle)DCD
PDB (SRS)2KSG    2YMK   
PDB (PDBSum)2KSG    2YMK   
PDB (IMB)2KSG    2YMK   
PDB (RSDB)2KSG    2YMK   
Structural Biology KnowledgeBase2KSG    2YMK   
SCOP (Structural Classification of Proteins)2KSG    2YMK   
CATH (Classification of proteins structures)2KSG    2YMK   
SuperfamilyP81605
Human Protein AtlasENSG00000161634
Peptide AtlasP81605
HPRD07363
IPIIPI00027547   IPI00847793   IPI00847892   
Protein Interaction databases
DIP (DOE-UCLA)P81605
IntAct (EBI)P81605
FunCoupENSG00000161634
BioGRIDDCD
STRING (EMBL)DCD
ZODIACDCD
Ontologies - Pathways
QuickGOP81605
Ontology : AmiGOprotein binding  extracellular region  extracellular space  proteolysis  peptidase activity  killing of cells of other organism  defense response to bacterium  poly(A) RNA binding  defense response to fungus  extracellular exosome  
Ontology : EGO-EBIprotein binding  extracellular region  extracellular space  proteolysis  peptidase activity  killing of cells of other organism  defense response to bacterium  poly(A) RNA binding  defense response to fungus  extracellular exosome  
NDEx NetworkDCD
Atlas of Cancer Signalling NetworkDCD
Wikipedia pathwaysDCD
Orthology - Evolution
OrthoDB117159
GeneTree (enSembl)ENSG00000161634
Phylogenetic Trees/Animal Genes : TreeFamDCD
HOVERGENP81605
HOGENOMP81605
Homologs : HomoloGeneDCD
Homology/Alignments : Family Browser (UCSC)DCD
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDCD [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DCD
dbVarDCD
ClinVarDCD
1000_GenomesDCD 
Exome Variant ServerDCD
ExAC (Exome Aggregation Consortium)DCD (select the gene name)
Genetic variants : HAPMAP117159
Genomic Variants (DGV)DCD [DGVbeta]
DECIPHER (Syndromes)12:55038375-55042277  ENSG00000161634
CONAN: Copy Number AnalysisDCD 
Mutations
ICGC Data PortalDCD 
TCGA Data PortalDCD 
Broad Tumor PortalDCD
OASIS PortalDCD [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDCD  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDCD
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DCD
DgiDB (Drug Gene Interaction Database)DCD
DoCM (Curated mutations)DCD (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DCD (select a term)
intoGenDCD
Cancer3DDCD(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606634   
Orphanet
MedgenDCD
Genetic Testing Registry DCD
NextProtP81605 [Medical]
TSGene117159
GENETestsDCD
Huge Navigator DCD [HugePedia]
snp3D : Map Gene to Disease117159
BioCentury BCIQDCD
ClinGenDCD
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD117159
Chemical/Pharm GKB GenePA27171
Clinical trialDCD
Miscellaneous
canSAR (ICR)DCD (select the gene name)
Probes
Litterature
PubMed72 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDCD
EVEXDCD
GoPubMedDCD
iHOPDCD
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:02:46 CET 2017

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