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DCDC1 (doublecortin domain containing 1)

Identity

Other aliasDCDC5
HGNC (Hugo) DCDC1
LocusID (NCBI) 341019
Atlas_Id 62326
Location 11p14.1  [Link to chromosome band 11p14]
Location_base_pair Starts at 30864944 and ends at 31369810 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DCDC1   20625
Cards
Entrez_Gene (NCBI)DCDC1  341019  doublecortin domain containing 1
AliasesDCDC5
GeneCards (Weizmann)DCDC1
Ensembl hg19 (Hinxton)ENSG00000170959 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170959 [Gene_View]  chr11:30864944-31369810 [Contig_View]  DCDC1 [Vega]
ICGC DataPortalENSG00000170959
TCGA cBioPortalDCDC1
AceView (NCBI)DCDC1
Genatlas (Paris)DCDC1
WikiGenes341019
SOURCE (Princeton)DCDC1
Genetics Home Reference (NIH)DCDC1
Genomic and cartography
GoldenPath hg38 (UCSC)DCDC1  -     chr11:30864944-31369810 -  11p14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DCDC1  -     11p14.1   [Description]    (hg19-Feb_2009)
EnsemblDCDC1 - 11p14.1 [CytoView hg19]  DCDC1 - 11p14.1 [CytoView hg38]
Mapping of homologs : NCBIDCDC1 [Mapview hg19]  DCDC1 [Mapview hg38]
OMIM608062   
Gene and transcription
Genbank (Entrez)AA846321 AA954541 AB040926 AK128035 AW340116
RefSeq transcript (Entrez)NM_001350255 NM_020869 NM_181807 NM_198462
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DCDC1
Cluster EST : UnigeneHs.730375 [ NCBI ]
CGAP (NCI)Hs.730375
Alternative Splicing GalleryENSG00000170959
Gene ExpressionDCDC1 [ NCBI-GEO ]   DCDC1 [ EBI - ARRAY_EXPRESS ]   DCDC1 [ SEEK ]   DCDC1 [ MEM ]
Gene Expression Viewer (FireBrowse)DCDC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)341019
GTEX Portal (Tissue expression)DCDC1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP59894   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP59894  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP59894
Splice isoforms : SwissVarP59894
PhosPhoSitePlusP59894
Domaine pattern : Prosite (Expaxy)DC (PS50309)   
Domains : Interpro (EBI)Doublecortin_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)DCDC1
DMDM Disease mutations341019
Blocks (Seattle)DCDC1
SuperfamilyP59894
Human Protein AtlasENSG00000170959
Peptide AtlasP59894
HPRD12158
IPIIPI00377096   IPI00853488   
Protein Interaction databases
DIP (DOE-UCLA)P59894
IntAct (EBI)P59894
FunCoupENSG00000170959
BioGRIDDCDC1
STRING (EMBL)DCDC1
ZODIACDCDC1
Ontologies - Pathways
QuickGOP59894
Ontology : AmiGOintracellular  intracellular signal transduction  
Ontology : EGO-EBIintracellular  intracellular signal transduction  
NDEx NetworkDCDC1
Atlas of Cancer Signalling NetworkDCDC1
Wikipedia pathwaysDCDC1
Orthology - Evolution
OrthoDB341019
GeneTree (enSembl)ENSG00000170959
Phylogenetic Trees/Animal Genes : TreeFamDCDC1
HOVERGENP59894
HOGENOMP59894
Homologs : HomoloGeneDCDC1
Homology/Alignments : Family Browser (UCSC)DCDC1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDCDC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DCDC1
dbVarDCDC1
ClinVarDCDC1
1000_GenomesDCDC1 
Exome Variant ServerDCDC1
ExAC (Exome Aggregation Consortium)DCDC1 (select the gene name)
Genetic variants : HAPMAP341019
Genomic Variants (DGV)DCDC1 [DGVbeta]
DECIPHERDCDC1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDCDC1 
Mutations
ICGC Data PortalDCDC1 
TCGA Data PortalDCDC1 
Broad Tumor PortalDCDC1
OASIS PortalDCDC1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDCDC1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDCDC1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DCDC1
DgiDB (Drug Gene Interaction Database)DCDC1
DoCM (Curated mutations)DCDC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DCDC1 (select a term)
intoGenDCDC1
Cancer3DDCDC1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608062   
Orphanet
MedgenDCDC1
Genetic Testing Registry DCDC1
NextProtP59894 [Medical]
TSGene341019
GENETestsDCDC1
Target ValidationDCDC1
Huge Navigator DCDC1 [HugePedia]
snp3D : Map Gene to Disease341019
BioCentury BCIQDCDC1
ClinGenDCDC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD341019
Chemical/Pharm GKB GenePA134970075
Clinical trialDCDC1
Miscellaneous
canSAR (ICR)DCDC1 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDCDC1
EVEXDCDC1
GoPubMedDCDC1
iHOPDCDC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:05:54 CEST 2017

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