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DCDC2B (doublecortin domain containing 2B)

Identity

Other alias-
HGNC (Hugo) DCDC2B
LocusID (NCBI) 149069
Atlas_Id 62327
Location 1p35.2  [Link to chromosome band 1p35]
Location_base_pair Starts at 32209094 and ends at 32216196 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DCDC2B   32576
Cards
Entrez_Gene (NCBI)DCDC2B  149069  doublecortin domain containing 2B
Aliases
GeneCards (Weizmann)DCDC2B
Ensembl hg19 (Hinxton)ENSG00000222046 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000222046 [Gene_View]  chr1:32209094-32216196 [Contig_View]  DCDC2B [Vega]
ICGC DataPortalENSG00000222046
TCGA cBioPortalDCDC2B
AceView (NCBI)DCDC2B
Genatlas (Paris)DCDC2B
WikiGenes149069
SOURCE (Princeton)DCDC2B
Genetics Home Reference (NIH)DCDC2B
Genomic and cartography
GoldenPath hg38 (UCSC)DCDC2B  -     chr1:32209094-32216196 +  1p35.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DCDC2B  -     1p35.2   [Description]    (hg19-Feb_2009)
EnsemblDCDC2B - 1p35.2 [CytoView hg19]  DCDC2B - 1p35.2 [CytoView hg38]
Mapping of homologs : NCBIDCDC2B [Mapview hg19]  DCDC2B [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC041458 BC128073 BM980133
RefSeq transcript (Entrez)NM_001099434
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DCDC2B
Cluster EST : UnigeneHs.424588 [ NCBI ]
CGAP (NCI)Hs.424588
Alternative Splicing GalleryENSG00000222046
Gene ExpressionDCDC2B [ NCBI-GEO ]   DCDC2B [ EBI - ARRAY_EXPRESS ]   DCDC2B [ SEEK ]   DCDC2B [ MEM ]
Gene Expression Viewer (FireBrowse)DCDC2B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)149069
GTEX Portal (Tissue expression)DCDC2B
Protein : pattern, domain, 3D structure
UniProt/SwissProtA2VCK2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA2VCK2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA2VCK2
Splice isoforms : SwissVarA2VCK2
PhosPhoSitePlusA2VCK2
Domaine pattern : Prosite (Expaxy)DC (PS50309)   
Domains : Interpro (EBI)Doublecortin_dom   
Domain families : Pfam (Sanger)DCX (PF03607)   
Domain families : Pfam (NCBI)pfam03607   
Domain families : Smart (EMBL)DCX (SM00537)  
Conserved Domain (NCBI)DCDC2B
DMDM Disease mutations149069
Blocks (Seattle)DCDC2B
SuperfamilyA2VCK2
Human Protein AtlasENSG00000222046
Peptide AtlasA2VCK2
IPIIPI00739883   
Protein Interaction databases
DIP (DOE-UCLA)A2VCK2
IntAct (EBI)A2VCK2
FunCoupENSG00000222046
BioGRIDDCDC2B
STRING (EMBL)DCDC2B
ZODIACDCDC2B
Ontologies - Pathways
QuickGOA2VCK2
Ontology : AmiGOprotein binding  intracellular  intracellular signal transduction  
Ontology : EGO-EBIprotein binding  intracellular  intracellular signal transduction  
NDEx NetworkDCDC2B
Atlas of Cancer Signalling NetworkDCDC2B
Wikipedia pathwaysDCDC2B
Orthology - Evolution
OrthoDB149069
GeneTree (enSembl)ENSG00000222046
Phylogenetic Trees/Animal Genes : TreeFamDCDC2B
HOVERGENA2VCK2
HOGENOMA2VCK2
Homologs : HomoloGeneDCDC2B
Homology/Alignments : Family Browser (UCSC)DCDC2B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDCDC2B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DCDC2B
dbVarDCDC2B
ClinVarDCDC2B
1000_GenomesDCDC2B 
Exome Variant ServerDCDC2B
ExAC (Exome Aggregation Consortium)DCDC2B (select the gene name)
Genetic variants : HAPMAP149069
Genomic Variants (DGV)DCDC2B [DGVbeta]
DECIPHERDCDC2B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDCDC2B 
Mutations
ICGC Data PortalDCDC2B 
TCGA Data PortalDCDC2B 
Broad Tumor PortalDCDC2B
OASIS PortalDCDC2B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDCDC2B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDCDC2B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DCDC2B
DgiDB (Drug Gene Interaction Database)DCDC2B
DoCM (Curated mutations)DCDC2B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DCDC2B (select a term)
intoGenDCDC2B
Cancer3DDCDC2B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenDCDC2B
Genetic Testing Registry DCDC2B
NextProtA2VCK2 [Medical]
TSGene149069
GENETestsDCDC2B
Huge Navigator DCDC2B [HugePedia]
snp3D : Map Gene to Disease149069
BioCentury BCIQDCDC2B
ClinGenDCDC2B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD149069
Chemical/Pharm GKB GenePA145008541
Clinical trialDCDC2B
Miscellaneous
canSAR (ICR)DCDC2B (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDCDC2B
EVEXDCDC2B
GoPubMedDCDC2B
iHOPDCDC2B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:07:50 CEST 2017

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