Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

DCDC2C (doublecortin domain containing 2C)

Identity

Alias_namesdoublecortin domain containing 2C pseudogene
Other alias-
HGNC (Hugo) DCDC2C
LocusID (NCBI) 728597
Atlas_Id 62328
Location 2p25.3  [Link to chromosome band 2p25]
Location_base_pair Starts at 3703592 and ends at 3847410 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DCDC2C   32696
Cards
Entrez_Gene (NCBI)DCDC2C  728597  doublecortin domain containing 2C
Aliases
GeneCards (Weizmann)DCDC2C
Ensembl hg19 (Hinxton)ENSG00000214866 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000214866 [Gene_View]  chr2:3703592-3847410 [Contig_View]  DCDC2C [Vega]
ICGC DataPortalENSG00000214866
TCGA cBioPortalDCDC2C
AceView (NCBI)DCDC2C
Genatlas (Paris)DCDC2C
WikiGenes728597
SOURCE (Princeton)DCDC2C
Genetics Home Reference (NIH)DCDC2C
Genomic and cartography
GoldenPath hg38 (UCSC)DCDC2C  -     chr2:3703592-3847410 +  2p25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DCDC2C  -     2p25.3   [Description]    (hg19-Feb_2009)
EnsemblDCDC2C - 2p25.3 [CytoView hg19]  DCDC2C - 2p25.3 [CytoView hg38]
Mapping of homologs : NCBIDCDC2C [Mapview hg19]  DCDC2C [Mapview hg38]
Gene and transcription
Genbank (Entrez)BG202560 DW010024 DY654549 HY010234 HY194445
RefSeq transcript (Entrez)NM_001287444
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DCDC2C
Cluster EST : UnigeneHs.631689 [ NCBI ]
CGAP (NCI)Hs.631689
Alternative Splicing GalleryENSG00000214866
Gene ExpressionDCDC2C [ NCBI-GEO ]   DCDC2C [ EBI - ARRAY_EXPRESS ]   DCDC2C [ SEEK ]   DCDC2C [ MEM ]
Gene Expression Viewer (FireBrowse)DCDC2C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728597
GTEX Portal (Tissue expression)DCDC2C
Human Protein AtlasENSG00000214866-DCDC2C [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8MYV0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8MYV0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8MYV0
Splice isoforms : SwissVarA8MYV0
PhosPhoSitePlusA8MYV0
Domaine pattern : Prosite (Expaxy)DC (PS50309)   
Domains : Interpro (EBI)Doublecortin_dom   
Domain families : Pfam (Sanger)DCX (PF03607)   
Domain families : Pfam (NCBI)pfam03607   
Domain families : Smart (EMBL)DCX (SM00537)  
Conserved Domain (NCBI)DCDC2C
DMDM Disease mutations728597
Blocks (Seattle)DCDC2C
SuperfamilyA8MYV0
Human Protein Atlas [tissue]ENSG00000214866-DCDC2C [tissue]
Peptide AtlasA8MYV0
IPIIPI00745833   
Protein Interaction databases
DIP (DOE-UCLA)A8MYV0
IntAct (EBI)A8MYV0
FunCoupENSG00000214866
BioGRIDDCDC2C
STRING (EMBL)DCDC2C
ZODIACDCDC2C
Ontologies - Pathways
QuickGOA8MYV0
Ontology : AmiGOintracellular  intracellular signal transduction  
Ontology : EGO-EBIintracellular  intracellular signal transduction  
NDEx NetworkDCDC2C
Atlas of Cancer Signalling NetworkDCDC2C
Wikipedia pathwaysDCDC2C
Orthology - Evolution
OrthoDB728597
GeneTree (enSembl)ENSG00000214866
Phylogenetic Trees/Animal Genes : TreeFamDCDC2C
HOVERGENA8MYV0
HOGENOMA8MYV0
Homologs : HomoloGeneDCDC2C
Homology/Alignments : Family Browser (UCSC)DCDC2C
Gene fusions - Rearrangements
Fusion: Tumor Portal DCDC2C
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDCDC2C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DCDC2C
dbVarDCDC2C
ClinVarDCDC2C
1000_GenomesDCDC2C 
Exome Variant ServerDCDC2C
ExAC (Exome Aggregation Consortium)ENSG00000214866
GNOMAD BrowserENSG00000214866
Genetic variants : HAPMAP728597
Genomic Variants (DGV)DCDC2C [DGVbeta]
DECIPHERDCDC2C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDCDC2C 
Mutations
ICGC Data PortalDCDC2C 
TCGA Data PortalDCDC2C 
Broad Tumor PortalDCDC2C
OASIS PortalDCDC2C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDCDC2C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDCDC2C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DCDC2C
DgiDB (Drug Gene Interaction Database)DCDC2C
DoCM (Curated mutations)DCDC2C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DCDC2C (select a term)
intoGenDCDC2C
Cancer3DDCDC2C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenDCDC2C
Genetic Testing Registry DCDC2C
NextProtA8MYV0 [Medical]
TSGene728597
GENETestsDCDC2C
Target ValidationDCDC2C
Huge Navigator DCDC2C [HugePedia]
snp3D : Map Gene to Disease728597
BioCentury BCIQDCDC2C
ClinGenDCDC2C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728597
Chemical/Pharm GKB GenePA145008542
Clinical trialDCDC2C
Miscellaneous
canSAR (ICR)DCDC2C (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDCDC2C
EVEXDCDC2C
GoPubMedDCDC2C
iHOPDCDC2C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:44:06 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.