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DCDC5 (doublecortin domain containing 5)

Identity

Alias_symbol (synonym)FLJ46154
Other alias-
HGNC (Hugo) DCDC5
LocusID (NCBI) 100506627
Atlas_Id 62329
Location 11p14.1  [Link to chromosome band 11p14]
Location_base_pair Starts at 30885150 and ends at 31014233 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
DCDC5 (11p14.1) / R3HDM4 (19p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DCDC5   24799
Cards
Entrez_Gene (NCBI)DCDC5  100506627  doublecortin domain containing 5
Aliases
GeneCards (Weizmann)DCDC5
Ensembl hg19 (Hinxton)ENSG00000170959 [Gene_View]  chr11:30885150-31014233 [Contig_View]  DCDC5 [Vega]
Ensembl hg38 (Hinxton)ENSG00000170959 [Gene_View]  chr11:30885150-31014233 [Contig_View]  DCDC5 [Vega]
ICGC DataPortalENSG00000170959
TCGA cBioPortalDCDC5
AceView (NCBI)DCDC5
Genatlas (Paris)DCDC5
WikiGenes100506627
SOURCE (Princeton)DCDC5
Genetics Home Reference (NIH)DCDC5
Genomic and cartography
GoldenPath hg19 (UCSC)DCDC5  -     chr11:30885150-31014233 -  11p14.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)DCDC5  -     11p14.1   [Description]    (hg38-Dec_2013)
EnsemblDCDC5 - 11p14.1 [CytoView hg19]  DCDC5 - 11p14.1 [CytoView hg38]
Mapping of homologs : NCBIDCDC5 [Mapview hg19]  DCDC5 [Mapview hg38]
OMIM612321   
Gene and transcription
Genbank (Entrez)AB040926 AW340116 BC156059 BC156942 BX116244
RefSeq transcript (Entrez)NM_020869 NM_198462
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_009237 NW_004929378
Consensus coding sequences : CCDS (NCBI)DCDC5
Cluster EST : UnigeneHs.730375 [ NCBI ]
CGAP (NCI)Hs.730375
Alternative Splicing GalleryENSG00000170959
Gene ExpressionDCDC5 [ NCBI-GEO ]   DCDC5 [ EBI - ARRAY_EXPRESS ]   DCDC5 [ SEEK ]   DCDC5 [ MEM ]
Gene Expression Viewer (FireBrowse)DCDC5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100506627
GTEX Portal (Tissue expression)DCDC5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZRR9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZRR9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZRR9
Splice isoforms : SwissVarQ6ZRR9
PhosPhoSitePlusQ6ZRR9
Domaine pattern : Prosite (Expaxy)DC (PS50309)   
Domains : Interpro (EBI)Doublecortin_dom    Ricin_B_lectin   
Domain families : Pfam (Sanger)Ricin_B_lectin (PF00652)   
Domain families : Pfam (NCBI)pfam00652   
Conserved Domain (NCBI)DCDC5
DMDM Disease mutations100506627
Blocks (Seattle)DCDC5
SuperfamilyQ6ZRR9
Human Protein AtlasENSG00000170959
Peptide AtlasQ6ZRR9
IPIIPI00001701   IPI00983555   IPI00877740   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZRR9
IntAct (EBI)Q6ZRR9
FunCoupENSG00000170959
BioGRIDDCDC5
STRING (EMBL)DCDC5
ZODIACDCDC5
Ontologies - Pathways
QuickGOQ6ZRR9
Ontology : AmiGOintracellular  intracellular signal transduction  
Ontology : EGO-EBIintracellular  intracellular signal transduction  
NDEx NetworkDCDC5
Atlas of Cancer Signalling NetworkDCDC5
Wikipedia pathwaysDCDC5
Orthology - Evolution
OrthoDB100506627
GeneTree (enSembl)ENSG00000170959
Phylogenetic Trees/Animal Genes : TreeFamDCDC5
HOVERGENQ6ZRR9
HOGENOMQ6ZRR9
Homologs : HomoloGeneDCDC5
Homology/Alignments : Family Browser (UCSC)DCDC5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDCDC5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DCDC5
dbVarDCDC5
ClinVarDCDC5
1000_GenomesDCDC5 
Exome Variant ServerDCDC5
ExAC (Exome Aggregation Consortium)DCDC5 (select the gene name)
Genetic variants : HAPMAP100506627
Genomic Variants (DGV)DCDC5 [DGVbeta]
DECIPHER (Syndromes)11:30885150-31014233  ENSG00000170959
CONAN: Copy Number AnalysisDCDC5 
Mutations
ICGC Data PortalDCDC5 
TCGA Data PortalDCDC5 
Broad Tumor PortalDCDC5
OASIS PortalDCDC5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDCDC5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDCDC5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DCDC5
DgiDB (Drug Gene Interaction Database)DCDC5
DoCM (Curated mutations)DCDC5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DCDC5 (select a term)
intoGenDCDC5
Cancer3DDCDC5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612321   
Orphanet
MedgenDCDC5
Genetic Testing Registry DCDC5
NextProtQ6ZRR9 [Medical]
TSGene100506627
GENETestsDCDC5
Huge Navigator DCDC5 [HugePedia]
snp3D : Map Gene to Disease100506627
BioCentury BCIQDCDC5
ClinGenDCDC5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100506627
Clinical trialDCDC5
Miscellaneous
canSAR (ICR)DCDC5 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDCDC5
EVEXDCDC5
GoPubMedDCDC5
iHOPDCDC5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:01:08 CET 2017

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