Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

DCHS1 (dachsous cadherin-related 1)

Identity

Alias_namesCDH25
PCDH16
protocadherin 16
dachsous 1 (Drosophila)
Alias_symbol (synonym)FIB1
KIAA1773
FLJ11790
CDHR6
Other aliasCDH19
MVP2
VMLDS1
HGNC (Hugo) DCHS1
LocusID (NCBI) 8642
Atlas_Id 56021
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 6621324 and ends at 6655849 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DCHS1   13681
Cards
Entrez_Gene (NCBI)DCHS1  8642  dachsous cadherin-related 1
AliasesCDH19; CDH25; CDHR6; FIB1; 
MVP2; PCDH16; VMLDS1
GeneCards (Weizmann)DCHS1
Ensembl hg19 (Hinxton)ENSG00000166341 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166341 [Gene_View]  chr11:6621324-6655849 [Contig_View]  DCHS1 [Vega]
ICGC DataPortalENSG00000166341
TCGA cBioPortalDCHS1
AceView (NCBI)DCHS1
Genatlas (Paris)DCHS1
WikiGenes8642
SOURCE (Princeton)DCHS1
Genetics Home Reference (NIH)DCHS1
Genomic and cartography
GoldenPath hg38 (UCSC)DCHS1  -     chr11:6621324-6655849 -  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DCHS1  -     11p15.4   [Description]    (hg19-Feb_2009)
EnsemblDCHS1 - 11p15.4 [CytoView hg19]  DCHS1 - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBIDCHS1 [Mapview hg19]  DCHS1 [Mapview hg38]
OMIM601390   603057   607829   
Gene and transcription
Genbank (Entrez)AB000895 AB053446 AI767189 AK021852 AL831828
RefSeq transcript (Entrez)NM_003737 NM_024542
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DCHS1
Cluster EST : UnigeneHs.199850 [ NCBI ]
CGAP (NCI)Hs.199850
Alternative Splicing GalleryENSG00000166341
Gene ExpressionDCHS1 [ NCBI-GEO ]   DCHS1 [ EBI - ARRAY_EXPRESS ]   DCHS1 [ SEEK ]   DCHS1 [ MEM ]
Gene Expression Viewer (FireBrowse)DCHS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8642
GTEX Portal (Tissue expression)DCHS1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96JQ0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96JQ0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96JQ0
Splice isoforms : SwissVarQ96JQ0
PhosPhoSitePlusQ96JQ0
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_CS   
Domain families : Pfam (Sanger)Cadherin (PF00028)   
Domain families : Pfam (NCBI)pfam00028   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)DCHS1
DMDM Disease mutations8642
Blocks (Seattle)DCHS1
SuperfamilyQ96JQ0
Human Protein AtlasENSG00000166341
Peptide AtlasQ96JQ0
HPRD04341
IPIIPI00064262   IPI00386090   
Protein Interaction databases
DIP (DOE-UCLA)Q96JQ0
IntAct (EBI)Q96JQ0
FunCoupENSG00000166341
BioGRIDDCHS1
STRING (EMBL)DCHS1
ZODIACDCHS1
Ontologies - Pathways
QuickGOQ96JQ0
Ontology : AmiGObranching involved in ureteric bud morphogenesis  mitral valve formation  cell migration involved in endocardial cushion formation  calcium ion binding  intracellular  plasma membrane  homophilic cell adhesion via plasma membrane adhesion molecules  heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules  pattern specification process  membrane  integral component of membrane  calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules  neural tube development  neurogenesis  hippo signaling  post-anal tail morphogenesis  ossification involved in bone maturation  apical part of cell  digestive tract development  condensed mesenchymal cell proliferation  protein localization to plasma membrane  cochlea development  
Ontology : EGO-EBIbranching involved in ureteric bud morphogenesis  mitral valve formation  cell migration involved in endocardial cushion formation  calcium ion binding  intracellular  plasma membrane  homophilic cell adhesion via plasma membrane adhesion molecules  heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules  pattern specification process  membrane  integral component of membrane  calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules  neural tube development  neurogenesis  hippo signaling  post-anal tail morphogenesis  ossification involved in bone maturation  apical part of cell  digestive tract development  condensed mesenchymal cell proliferation  protein localization to plasma membrane  cochlea development  
NDEx NetworkDCHS1
Atlas of Cancer Signalling NetworkDCHS1
Wikipedia pathwaysDCHS1
Orthology - Evolution
OrthoDB8642
GeneTree (enSembl)ENSG00000166341
Phylogenetic Trees/Animal Genes : TreeFamDCHS1
HOVERGENQ96JQ0
HOGENOMQ96JQ0
Homologs : HomoloGeneDCHS1
Homology/Alignments : Family Browser (UCSC)DCHS1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDCHS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DCHS1
dbVarDCHS1
ClinVarDCHS1
1000_GenomesDCHS1 
Exome Variant ServerDCHS1
ExAC (Exome Aggregation Consortium)DCHS1 (select the gene name)
Genetic variants : HAPMAP8642
Genomic Variants (DGV)DCHS1 [DGVbeta]
DECIPHERDCHS1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDCHS1 
Mutations
ICGC Data PortalDCHS1 
TCGA Data PortalDCHS1 
Broad Tumor PortalDCHS1
OASIS PortalDCHS1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDCHS1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDCHS1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DCHS1
DgiDB (Drug Gene Interaction Database)DCHS1
DoCM (Curated mutations)DCHS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DCHS1 (select a term)
intoGenDCHS1
Cancer3DDCHS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601390    603057    607829   
Orphanet21513    5541   
MedgenDCHS1
Genetic Testing Registry DCHS1
NextProtQ96JQ0 [Medical]
TSGene8642
GENETestsDCHS1
Target ValidationDCHS1
Huge Navigator DCHS1 [HugePedia]
snp3D : Map Gene to Disease8642
BioCentury BCIQDCHS1
ClinGenDCHS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8642
Chemical/Pharm GKB GenePA33000
Clinical trialDCHS1
Miscellaneous
canSAR (ICR)DCHS1 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDCHS1
EVEXDCHS1
GoPubMedDCHS1
iHOPDCHS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 1 16:59:14 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.