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DCHS2 (dachsous cadherin-related 2)

Identity

Other aliasCDH27
CDHJ
CDHR7
PCDH23
PCDHJ
HGNC (Hugo) DCHS2
LocusID (NCBI) 54798
Atlas_Id 56683
Location 4q31.3  [Link to chromosome band 4q31]
Location_base_pair Starts at 154322654 and ends at 154491725 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DCHS2 (4q31.3) / FGG (4q31.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DCHS2   23111
Cards
Entrez_Gene (NCBI)DCHS2  54798  dachsous cadherin-related 2
AliasesCDH27; CDHJ; CDHR7; PCDH23; 
PCDHJ
GeneCards (Weizmann)DCHS2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr4:154322654-154491725 [Contig_View]  DCHS2 [Vega]
TCGA cBioPortalDCHS2
AceView (NCBI)DCHS2
Genatlas (Paris)DCHS2
WikiGenes54798
SOURCE (Princeton)DCHS2
Genetics Home Reference (NIH)DCHS2
Genomic and cartography
GoldenPath hg38 (UCSC)DCHS2  -     chr4:154322654-154491725 -  4q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DCHS2  -     4q31.3   [Description]    (hg19-Feb_2009)
EnsemblDCHS2 - 4q31.3 [CytoView hg19]  DCHS2 - 4q31.3 [CytoView hg38]
Mapping of homologs : NCBIDCHS2 [Mapview hg19]  DCHS2 [Mapview hg38]
OMIM612486   
Gene and transcription
Genbank (Entrez)AF169691 AK000054 AK095103 AK127704 AK225200
RefSeq transcript (Entrez)NM_001142552 NM_001142553 NM_017639 NM_199348
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DCHS2
Cluster EST : UnigeneHs.655664 [ NCBI ]
CGAP (NCI)Hs.655664
Gene ExpressionDCHS2 [ NCBI-GEO ]   DCHS2 [ EBI - ARRAY_EXPRESS ]   DCHS2 [ SEEK ]   DCHS2 [ MEM ]
Gene Expression Viewer (FireBrowse)DCHS2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54798
GTEX Portal (Tissue expression)DCHS2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6V1P9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6V1P9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6V1P9
Splice isoforms : SwissVarQ6V1P9
PhosPhoSitePlusQ6V1P9
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_CS   
Domain families : Pfam (Sanger)Cadherin (PF00028)   
Domain families : Pfam (NCBI)pfam00028   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)DCHS2
DMDM Disease mutations54798
Blocks (Seattle)DCHS2
SuperfamilyQ6V1P9
Peptide AtlasQ6V1P9
IPIIPI00014829   IPI00896525   IPI01013679   IPI00915930   IPI00399257   
Protein Interaction databases
DIP (DOE-UCLA)Q6V1P9
IntAct (EBI)Q6V1P9
BioGRIDDCHS2
STRING (EMBL)DCHS2
ZODIACDCHS2
Ontologies - Pathways
QuickGOQ6V1P9
Ontology : AmiGOmolecular_function  calcium ion binding  cellular_component  plasma membrane  homophilic cell adhesion via plasma membrane adhesion molecules  biological_process  integral component of membrane  nephron development  condensed mesenchymal cell proliferation  
Ontology : EGO-EBImolecular_function  calcium ion binding  cellular_component  plasma membrane  homophilic cell adhesion via plasma membrane adhesion molecules  biological_process  integral component of membrane  nephron development  condensed mesenchymal cell proliferation  
NDEx NetworkDCHS2
Atlas of Cancer Signalling NetworkDCHS2
Wikipedia pathwaysDCHS2
Orthology - Evolution
OrthoDB54798
Phylogenetic Trees/Animal Genes : TreeFamDCHS2
HOVERGENQ6V1P9
HOGENOMQ6V1P9
Homologs : HomoloGeneDCHS2
Homology/Alignments : Family Browser (UCSC)DCHS2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDCHS2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DCHS2
dbVarDCHS2
ClinVarDCHS2
1000_GenomesDCHS2 
Exome Variant ServerDCHS2
ExAC (Exome Aggregation Consortium)DCHS2 (select the gene name)
Genetic variants : HAPMAP54798
Genomic Variants (DGV)DCHS2 [DGVbeta]
DECIPHERDCHS2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDCHS2 
Mutations
ICGC Data PortalDCHS2 
TCGA Data PortalDCHS2 
Broad Tumor PortalDCHS2
OASIS PortalDCHS2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDCHS2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDCHS2
BioMutasearch DCHS2
DgiDB (Drug Gene Interaction Database)DCHS2
DoCM (Curated mutations)DCHS2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DCHS2 (select a term)
intoGenDCHS2
Cancer3DDCHS2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612486   
Orphanet
MedgenDCHS2
Genetic Testing Registry DCHS2
NextProtQ6V1P9 [Medical]
TSGene54798
GENETestsDCHS2
Huge Navigator DCHS2 [HugePedia]
snp3D : Map Gene to Disease54798
BioCentury BCIQDCHS2
ClinGenDCHS2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54798
Chemical/Pharm GKB GenePA134953793
Clinical trialDCHS2
Miscellaneous
canSAR (ICR)DCHS2 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDCHS2
EVEXDCHS2
GoPubMedDCHS2
iHOPDCHS2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:12:48 CEST 2017

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