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DCLRE1B (DNA cross-link repair 1B)

Identity

Alias_namesDNA cross-link repair 1B (PSO2 homolog
Alias_symbol (synonym)SNM1B
FLJ12810
FLJ13998
Other aliasAPOLLO
SNMIB
HGNC (Hugo) DCLRE1B
LocusID (NCBI) 64858
Atlas_Id 40272
Location 1p13.2  [Link to chromosome band 1p13]
Location_base_pair Starts at 113905293 and ends at 113914086 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DCLRE1B   17641
Cards
Entrez_Gene (NCBI)DCLRE1B  64858  DNA cross-link repair 1B
AliasesAPOLLO; SNM1B; SNMIB
GeneCards (Weizmann)DCLRE1B
Ensembl hg19 (Hinxton)ENSG00000118655 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000118655 [Gene_View]  chr1:113905293-113914086 [Contig_View]  DCLRE1B [Vega]
ICGC DataPortalENSG00000118655
TCGA cBioPortalDCLRE1B
AceView (NCBI)DCLRE1B
Genatlas (Paris)DCLRE1B
WikiGenes64858
SOURCE (Princeton)DCLRE1B
Genetics Home Reference (NIH)DCLRE1B
Genomic and cartography
GoldenPath hg38 (UCSC)DCLRE1B  -     chr1:113905293-113914086 +  1p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DCLRE1B  -     1p13.2   [Description]    (hg19-Feb_2009)
EnsemblDCLRE1B - 1p13.2 [CytoView hg19]  DCLRE1B - 1p13.2 [CytoView hg38]
Mapping of homologs : NCBIDCLRE1B [Mapview hg19]  DCLRE1B [Mapview hg38]
OMIM609683   
Gene and transcription
Genbank (Entrez)AF306690 AF306691 AF306692 AF306693 AI669133
RefSeq transcript (Entrez)NM_001319946 NM_001319947 NM_022836
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DCLRE1B
Cluster EST : UnigeneHs.628365 [ NCBI ]
CGAP (NCI)Hs.628365
Alternative Splicing GalleryENSG00000118655
Gene ExpressionDCLRE1B [ NCBI-GEO ]   DCLRE1B [ EBI - ARRAY_EXPRESS ]   DCLRE1B [ SEEK ]   DCLRE1B [ MEM ]
Gene Expression Viewer (FireBrowse)DCLRE1B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64858
GTEX Portal (Tissue expression)DCLRE1B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H816   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H816  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H816
Splice isoforms : SwissVarQ9H816
Catalytic activity : Enzyme3.1.-.- [ Enzyme-Expasy ]   3.1.-.-3.1.-.- [ IntEnz-EBI ]   3.1.-.- [ BRENDA ]   3.1.-.- [ KEGG ]   
PhosPhoSitePlusQ9H816
Domains : Interpro (EBI)DRMBL    Metallo-B-lactamas   
Domain families : Pfam (Sanger)DRMBL (PF07522)   
Domain families : Pfam (NCBI)pfam07522   
Conserved Domain (NCBI)DCLRE1B
DMDM Disease mutations64858
Blocks (Seattle)DCLRE1B
PDB (SRS)3BUA    5AHO   
PDB (PDBSum)3BUA    5AHO   
PDB (IMB)3BUA    5AHO   
PDB (RSDB)3BUA    5AHO   
Structural Biology KnowledgeBase3BUA    5AHO   
SCOP (Structural Classification of Proteins)3BUA    5AHO   
CATH (Classification of proteins structures)3BUA    5AHO   
SuperfamilyQ9H816
Human Protein AtlasENSG00000118655
Peptide AtlasQ9H816
HPRD16785
IPIIPI00010223   
Protein Interaction databases
DIP (DOE-UCLA)Q9H816
IntAct (EBI)Q9H816
FunCoupENSG00000118655
BioGRIDDCLRE1B
STRING (EMBL)DCLRE1B
ZODIACDCLRE1B
Ontologies - Pathways
QuickGOQ9H816
Ontology : AmiGOcell cycle checkpoint  telomere maintenance  chromosome, telomeric region  nuclear chromosome, telomeric region  nuclear chromosome, telomeric region  damaged DNA binding  protein binding  nucleoplasm  cytoplasm  centrosome  double-strand break repair via nonhomologous end joining  5'-3' exonuclease activity  telomere maintenance via telomere lengthening  telomere capping  nuclear body  telomeric loop formation  protection from non-homologous end joining at telomere  telomeric 3' overhang formation  5'-3' exodeoxyribonuclease activity  interstrand cross-link repair  interstrand cross-link repair  protein homodimerization activity  macromolecular complex binding  nucleic acid phosphodiester bond hydrolysis  
Ontology : EGO-EBIcell cycle checkpoint  telomere maintenance  chromosome, telomeric region  nuclear chromosome, telomeric region  nuclear chromosome, telomeric region  damaged DNA binding  protein binding  nucleoplasm  cytoplasm  centrosome  double-strand break repair via nonhomologous end joining  5'-3' exonuclease activity  telomere maintenance via telomere lengthening  telomere capping  nuclear body  telomeric loop formation  protection from non-homologous end joining at telomere  telomeric 3' overhang formation  5'-3' exodeoxyribonuclease activity  interstrand cross-link repair  interstrand cross-link repair  protein homodimerization activity  macromolecular complex binding  nucleic acid phosphodiester bond hydrolysis  
NDEx NetworkDCLRE1B
Atlas of Cancer Signalling NetworkDCLRE1B
Wikipedia pathwaysDCLRE1B
Orthology - Evolution
OrthoDB64858
GeneTree (enSembl)ENSG00000118655
Phylogenetic Trees/Animal Genes : TreeFamDCLRE1B
HOVERGENQ9H816
HOGENOMQ9H816
Homologs : HomoloGeneDCLRE1B
Homology/Alignments : Family Browser (UCSC)DCLRE1B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDCLRE1B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DCLRE1B
dbVarDCLRE1B
ClinVarDCLRE1B
1000_GenomesDCLRE1B 
Exome Variant ServerDCLRE1B
ExAC (Exome Aggregation Consortium)DCLRE1B (select the gene name)
Genetic variants : HAPMAP64858
Genomic Variants (DGV)DCLRE1B [DGVbeta]
DECIPHERDCLRE1B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDCLRE1B 
Mutations
ICGC Data PortalDCLRE1B 
TCGA Data PortalDCLRE1B 
Broad Tumor PortalDCLRE1B
OASIS PortalDCLRE1B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDCLRE1B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDCLRE1B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DCLRE1B
DgiDB (Drug Gene Interaction Database)DCLRE1B
DoCM (Curated mutations)DCLRE1B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DCLRE1B (select a term)
intoGenDCLRE1B
Cancer3DDCLRE1B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609683   
Orphanet
MedgenDCLRE1B
Genetic Testing Registry DCLRE1B
NextProtQ9H816 [Medical]
TSGene64858
GENETestsDCLRE1B
Target ValidationDCLRE1B
Huge Navigator DCLRE1B [HugePedia]
snp3D : Map Gene to Disease64858
BioCentury BCIQDCLRE1B
ClinGenDCLRE1B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64858
Chemical/Pharm GKB GenePA27175
Clinical trialDCLRE1B
Miscellaneous
canSAR (ICR)DCLRE1B (select the gene name)
Probes
Litterature
PubMed31 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDCLRE1B
EVEXDCLRE1B
GoPubMedDCLRE1B
iHOPDCLRE1B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:59:15 CEST 2017

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