Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

DCPS (decapping enzyme, scavenger)

Identity

Alias_symbol (synonym)HSPC015
HINT-5
HSL1
Other aliasARS
DCS1
HINT5
HGNC (Hugo) DCPS
LocusID (NCBI) 28960
Atlas_Id 42988
Location 11q24.2  [Link to chromosome band 11q24]
Location_base_pair Starts at 126303752 and ends at 126350005 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DCPS (11q24.2) / C7 (5p13.1)KMT2A (11q23.3) / DCPS (11q24.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DCPS   29812
Cards
Entrez_Gene (NCBI)DCPS  28960  decapping enzyme, scavenger
AliasesARS; DCS1; HINT-5; HINT5; 
HSL1; HSPC015
GeneCards (Weizmann)DCPS
Ensembl hg19 (Hinxton)ENSG00000110063 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000110063 [Gene_View]  chr11:126303752-126350005 [Contig_View]  DCPS [Vega]
ICGC DataPortalENSG00000110063
TCGA cBioPortalDCPS
AceView (NCBI)DCPS
Genatlas (Paris)DCPS
WikiGenes28960
SOURCE (Princeton)DCPS
Genetics Home Reference (NIH)DCPS
Genomic and cartography
GoldenPath hg38 (UCSC)DCPS  -     chr11:126303752-126350005 +  11q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DCPS  -     11q24.2   [Description]    (hg19-Feb_2009)
EnsemblDCPS - 11q24.2 [CytoView hg19]  DCPS - 11q24.2 [CytoView hg38]
Mapping of homologs : NCBIDCPS [Mapview hg19]  DCPS [Mapview hg38]
OMIM610534   616459   
Gene and transcription
Genbank (Entrez)AF077201 AF532613 AK026554 AK090828 AK223089
RefSeq transcript (Entrez)NM_001350236 NM_014026
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DCPS
Cluster EST : UnigeneHs.651497 [ NCBI ]
CGAP (NCI)Hs.651497
Alternative Splicing GalleryENSG00000110063
Gene ExpressionDCPS [ NCBI-GEO ]   DCPS [ EBI - ARRAY_EXPRESS ]   DCPS [ SEEK ]   DCPS [ MEM ]
Gene Expression Viewer (FireBrowse)DCPS [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)28960
GTEX Portal (Tissue expression)DCPS
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96C86   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96C86  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96C86
Splice isoforms : SwissVarQ96C86
Catalytic activity : Enzyme3.6.1.59 [ Enzyme-Expasy ]   3.6.1.593.6.1.59 [ IntEnz-EBI ]   3.6.1.59 [ BRENDA ]   3.6.1.59 [ KEGG ]   
PhosPhoSitePlusQ96C86
Domaine pattern : Prosite (Expaxy)HIT_1 (PS00892)   
Domains : Interpro (EBI)DcpS/DCS2    Histidine_triad_CS    HIT-like    Scavenger_mRNA_decap_enz_N   
Domain families : Pfam (Sanger)DcpS (PF05652)   
Domain families : Pfam (NCBI)pfam05652   
Conserved Domain (NCBI)DCPS
DMDM Disease mutations28960
Blocks (Seattle)DCPS
PDB (SRS)1ST0    1ST4    1XML    1XMM    3BL7    3BL9    3BLA    4QDE    4QDV    4QEB   
PDB (PDBSum)1ST0    1ST4    1XML    1XMM    3BL7    3BL9    3BLA    4QDE    4QDV    4QEB   
PDB (IMB)1ST0    1ST4    1XML    1XMM    3BL7    3BL9    3BLA    4QDE    4QDV    4QEB   
PDB (RSDB)1ST0    1ST4    1XML    1XMM    3BL7    3BL9    3BLA    4QDE    4QDV    4QEB   
Structural Biology KnowledgeBase1ST0    1ST4    1XML    1XMM    3BL7    3BL9    3BLA    4QDE    4QDV    4QEB   
SCOP (Structural Classification of Proteins)1ST0    1ST4    1XML    1XMM    3BL7    3BL9    3BLA    4QDE    4QDV    4QEB   
CATH (Classification of proteins structures)1ST0    1ST4    1XML    1XMM    3BL7    3BL9    3BLA    4QDE    4QDV    4QEB   
SuperfamilyQ96C86
Human Protein AtlasENSG00000110063
Peptide AtlasQ96C86
HPRD16787
IPIIPI00335385   
Protein Interaction databases
DIP (DOE-UCLA)Q96C86
IntAct (EBI)Q96C86
FunCoupENSG00000110063
BioGRIDDCPS
STRING (EMBL)DCPS
ZODIACDCPS
Ontologies - Pathways
QuickGOQ96C86
Ontology : AmiGOnuclear-transcribed mRNA catabolic process, deadenylation-dependent decay  deadenylation-dependent decapping of nuclear-transcribed mRNA  RNA 7-methylguanosine cap binding  P-body  exoribonuclease activity  protein binding  nucleus  nucleoplasm  cytoplasm  mitochondrion  cytosol  cytosol  cellular response to menadione  negative regulation of programmed cell death  exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay  mRNA cis splicing, via spliceosome  m7G(5')pppN diphosphatase activity  RNA phosphodiester bond hydrolysis, exonucleolytic  
Ontology : EGO-EBInuclear-transcribed mRNA catabolic process, deadenylation-dependent decay  deadenylation-dependent decapping of nuclear-transcribed mRNA  RNA 7-methylguanosine cap binding  P-body  exoribonuclease activity  protein binding  nucleus  nucleoplasm  cytoplasm  mitochondrion  cytosol  cytosol  cellular response to menadione  negative regulation of programmed cell death  exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay  mRNA cis splicing, via spliceosome  m7G(5')pppN diphosphatase activity  RNA phosphodiester bond hydrolysis, exonucleolytic  
Pathways : KEGGRNA degradation   
NDEx NetworkDCPS
Atlas of Cancer Signalling NetworkDCPS
Wikipedia pathwaysDCPS
Orthology - Evolution
OrthoDB28960
GeneTree (enSembl)ENSG00000110063
Phylogenetic Trees/Animal Genes : TreeFamDCPS
HOVERGENQ96C86
HOGENOMQ96C86
Homologs : HomoloGeneDCPS
Homology/Alignments : Family Browser (UCSC)DCPS
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDCPS [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DCPS
dbVarDCPS
ClinVarDCPS
1000_GenomesDCPS 
Exome Variant ServerDCPS
ExAC (Exome Aggregation Consortium)DCPS (select the gene name)
Genetic variants : HAPMAP28960
Genomic Variants (DGV)DCPS [DGVbeta]
DECIPHERDCPS [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDCPS 
Mutations
ICGC Data PortalDCPS 
TCGA Data PortalDCPS 
Broad Tumor PortalDCPS
OASIS PortalDCPS [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDCPS  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDCPS
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DCPS
DgiDB (Drug Gene Interaction Database)DCPS
DoCM (Curated mutations)DCPS (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DCPS (select a term)
intoGenDCPS
Cancer3DDCPS(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610534    616459   
Orphanet11804   
MedgenDCPS
Genetic Testing Registry DCPS
NextProtQ96C86 [Medical]
TSGene28960
GENETestsDCPS
Target ValidationDCPS
Huge Navigator DCPS [HugePedia]
snp3D : Map Gene to Disease28960
BioCentury BCIQDCPS
ClinGenDCPS
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD28960
Chemical/Pharm GKB GenePA134863866
Clinical trialDCPS
Miscellaneous
canSAR (ICR)DCPS (select the gene name)
Probes
Litterature
PubMed38 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDCPS
EVEXDCPS
GoPubMedDCPS
iHOPDCPS
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:30:44 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.