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DCST1 (DC-STAMP domain containing 1)

Identity

Alias_symbol (synonym)FLJ32785
Other alias-
HGNC (Hugo) DCST1
LocusID (NCBI) 149095
Atlas_Id 62334
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 155033806 and ends at 155050930 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ADAM15 (1q22) / DCST1 (1q22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DCST1   26539
Cards
Entrez_Gene (NCBI)DCST1  149095  DC-STAMP domain containing 1
Aliases
GeneCards (Weizmann)DCST1
Ensembl hg19 (Hinxton)ENSG00000163357 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163357 [Gene_View]  chr1:155033806-155050930 [Contig_View]  DCST1 [Vega]
ICGC DataPortalENSG00000163357
TCGA cBioPortalDCST1
AceView (NCBI)DCST1
Genatlas (Paris)DCST1
WikiGenes149095
SOURCE (Princeton)DCST1
Genetics Home Reference (NIH)DCST1
Genomic and cartography
GoldenPath hg38 (UCSC)DCST1  -     chr1:155033806-155050930 +  1q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DCST1  -     1q21.3   [Description]    (hg19-Feb_2009)
EnsemblDCST1 - 1q21.3 [CytoView hg19]  DCST1 - 1q21.3 [CytoView hg38]
Mapping of homologs : NCBIDCST1 [Mapview hg19]  DCST1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057347 AK301876 AK301902 AK301935 BC064844
RefSeq transcript (Entrez)NM_001143687 NM_152494
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DCST1
Cluster EST : UnigeneHs.567717 [ NCBI ]
CGAP (NCI)Hs.567717
Alternative Splicing GalleryENSG00000163357
Gene ExpressionDCST1 [ NCBI-GEO ]   DCST1 [ EBI - ARRAY_EXPRESS ]   DCST1 [ SEEK ]   DCST1 [ MEM ]
Gene Expression Viewer (FireBrowse)DCST1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)149095
GTEX Portal (Tissue expression)DCST1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T197   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T197  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T197
Splice isoforms : SwissVarQ5T197
PhosPhoSitePlusQ5T197
Domaine pattern : Prosite (Expaxy)ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)DC_STAMP-like    Znf_RING   
Domain families : Pfam (Sanger)DC_STAMP (PF07782)   
Domain families : Pfam (NCBI)pfam07782   
Conserved Domain (NCBI)DCST1
DMDM Disease mutations149095
Blocks (Seattle)DCST1
SuperfamilyQ5T197
Human Protein AtlasENSG00000163357
Peptide AtlasQ5T197
HPRD08733
IPIIPI00065378   IPI00641631   IPI00909710   IPI00916777   
Protein Interaction databases
DIP (DOE-UCLA)Q5T197
IntAct (EBI)Q5T197
FunCoupENSG00000163357
BioGRIDDCST1
STRING (EMBL)DCST1
ZODIACDCST1
Ontologies - Pathways
QuickGOQ5T197
Ontology : AmiGOzinc ion binding  integral component of membrane  
Ontology : EGO-EBIzinc ion binding  integral component of membrane  
NDEx NetworkDCST1
Atlas of Cancer Signalling NetworkDCST1
Wikipedia pathwaysDCST1
Orthology - Evolution
OrthoDB149095
GeneTree (enSembl)ENSG00000163357
Phylogenetic Trees/Animal Genes : TreeFamDCST1
HOVERGENQ5T197
HOGENOMQ5T197
Homologs : HomoloGeneDCST1
Homology/Alignments : Family Browser (UCSC)DCST1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDCST1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DCST1
dbVarDCST1
ClinVarDCST1
1000_GenomesDCST1 
Exome Variant ServerDCST1
ExAC (Exome Aggregation Consortium)DCST1 (select the gene name)
Genetic variants : HAPMAP149095
Genomic Variants (DGV)DCST1 [DGVbeta]
DECIPHERDCST1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDCST1 
Mutations
ICGC Data PortalDCST1 
TCGA Data PortalDCST1 
Broad Tumor PortalDCST1
OASIS PortalDCST1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDCST1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDCST1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DCST1
DgiDB (Drug Gene Interaction Database)DCST1
DoCM (Curated mutations)DCST1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DCST1 (select a term)
intoGenDCST1
Cancer3DDCST1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenDCST1
Genetic Testing Registry DCST1
NextProtQ5T197 [Medical]
TSGene149095
GENETestsDCST1
Target ValidationDCST1
Huge Navigator DCST1 [HugePedia]
snp3D : Map Gene to Disease149095
BioCentury BCIQDCST1
ClinGenDCST1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD149095
Chemical/Pharm GKB GenePA142672005
Clinical trialDCST1
Miscellaneous
canSAR (ICR)DCST1 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDCST1
EVEXDCST1
GoPubMedDCST1
iHOPDCST1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:05:55 CEST 2017

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