Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

DCSTAMP (dendrocyte expressed seven transmembrane protein)

Identity

Alias_namesTM7SF4
transmembrane 7 superfamily member 4
Alias_symbol (synonym)DC-STAMP
FIND
Other aliashDC-STAMP
HGNC (Hugo) DCSTAMP
LocusID (NCBI) 81501
Atlas_Id 50923
Location 8q22.3  [Link to chromosome band 8q22]
Location_base_pair Starts at 105352024 and ends at 105368917 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DCSTAMP   18549
Cards
Entrez_Gene (NCBI)DCSTAMP  81501  dendrocyte expressed seven transmembrane protein
AliasesFIND; TM7SF4; hDC-STAMP
GeneCards (Weizmann)DCSTAMP
Ensembl hg19 (Hinxton)ENSG00000164935 [Gene_View]  chr8:105352024-105368917 [Contig_View]  DCSTAMP [Vega]
Ensembl hg38 (Hinxton)ENSG00000164935 [Gene_View]  chr8:105352024-105368917 [Contig_View]  DCSTAMP [Vega]
ICGC DataPortalENSG00000164935
TCGA cBioPortalDCSTAMP
AceView (NCBI)DCSTAMP
Genatlas (Paris)DCSTAMP
WikiGenes81501
SOURCE (Princeton)DCSTAMP
Genetics Home Reference (NIH)DCSTAMP
Genomic and cartography
GoldenPath hg19 (UCSC)DCSTAMP  -     chr8:105352024-105368917 +  8q22.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)DCSTAMP  -     8q22.3   [Description]    (hg38-Dec_2013)
EnsemblDCSTAMP - 8q22.3 [CytoView hg19]  DCSTAMP - 8q22.3 [CytoView hg38]
Mapping of homologs : NCBIDCSTAMP [Mapview hg19]  DCSTAMP [Mapview hg38]
OMIM605933   
Gene and transcription
Genbank (Entrez)AF277290 AF305068 AK095417 BC069349 BC112018
RefSeq transcript (Entrez)NM_001257317 NM_030788
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_008046 NW_004929340
Consensus coding sequences : CCDS (NCBI)DCSTAMP
Cluster EST : UnigeneHs.741954 [ NCBI ]
CGAP (NCI)Hs.741954
Alternative Splicing GalleryENSG00000164935
Gene ExpressionDCSTAMP [ NCBI-GEO ]   DCSTAMP [ EBI - ARRAY_EXPRESS ]   DCSTAMP [ SEEK ]   DCSTAMP [ MEM ]
Gene Expression Viewer (FireBrowse)DCSTAMP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81501
GTEX Portal (Tissue expression)DCSTAMP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H295   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H295  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H295
Splice isoforms : SwissVarQ9H295
PhosPhoSitePlusQ9H295
Domains : Interpro (EBI)DC_STAMP-like   
Domain families : Pfam (Sanger)DC_STAMP (PF07782)   
Domain families : Pfam (NCBI)pfam07782   
Conserved Domain (NCBI)DCSTAMP
DMDM Disease mutations81501
Blocks (Seattle)DCSTAMP
SuperfamilyQ9H295
Human Protein AtlasENSG00000164935
Peptide AtlasQ9H295
HPRD07295
IPIIPI00006545   IPI00975852   
Protein Interaction databases
DIP (DOE-UCLA)Q9H295
IntAct (EBI)Q9H295
FunCoupENSG00000164935
BioGRIDDCSTAMP
STRING (EMBL)DCSTAMP
ZODIACDCSTAMP
Ontologies - Pathways
QuickGOQ9H295
Ontology : AmiGOprotein binding  endoplasmic reticulum membrane  integral component of plasma membrane  cell surface  endosome membrane  integral component of membrane  integral component of endoplasmic reticulum membrane  negative regulation of cell growth  osteoclast differentiation  endoplasmic reticulum-Golgi intermediate compartment membrane  positive regulation of macrophage fusion  cellular response to macrophage colony-stimulating factor stimulus  myeloid dendritic cell differentiation  positive regulation of monocyte differentiation  positive regulation of bone resorption  membrane fusion  cellular response to interleukin-4  cellular response to tumor necrosis factor  osteoclast fusion  
Ontology : EGO-EBIprotein binding  endoplasmic reticulum membrane  integral component of plasma membrane  cell surface  endosome membrane  integral component of membrane  integral component of endoplasmic reticulum membrane  negative regulation of cell growth  osteoclast differentiation  endoplasmic reticulum-Golgi intermediate compartment membrane  positive regulation of macrophage fusion  cellular response to macrophage colony-stimulating factor stimulus  myeloid dendritic cell differentiation  positive regulation of monocyte differentiation  positive regulation of bone resorption  membrane fusion  cellular response to interleukin-4  cellular response to tumor necrosis factor  osteoclast fusion  
NDEx NetworkDCSTAMP
Atlas of Cancer Signalling NetworkDCSTAMP
Wikipedia pathwaysDCSTAMP
Orthology - Evolution
OrthoDB81501
GeneTree (enSembl)ENSG00000164935
Phylogenetic Trees/Animal Genes : TreeFamDCSTAMP
HOVERGENQ9H295
HOGENOMQ9H295
Homologs : HomoloGeneDCSTAMP
Homology/Alignments : Family Browser (UCSC)DCSTAMP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDCSTAMP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DCSTAMP
dbVarDCSTAMP
ClinVarDCSTAMP
1000_GenomesDCSTAMP 
Exome Variant ServerDCSTAMP
ExAC (Exome Aggregation Consortium)DCSTAMP (select the gene name)
Genetic variants : HAPMAP81501
Genomic Variants (DGV)DCSTAMP [DGVbeta]
DECIPHER (Syndromes)8:105352024-105368917  ENSG00000164935
CONAN: Copy Number AnalysisDCSTAMP 
Mutations
ICGC Data PortalDCSTAMP 
TCGA Data PortalDCSTAMP 
Broad Tumor PortalDCSTAMP
OASIS PortalDCSTAMP [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDDCSTAMP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DCSTAMP
DgiDB (Drug Gene Interaction Database)DCSTAMP
DoCM (Curated mutations)DCSTAMP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DCSTAMP (select a term)
intoGenDCSTAMP
Cancer3DDCSTAMP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605933   
Orphanet
MedgenDCSTAMP
Genetic Testing Registry DCSTAMP
NextProtQ9H295 [Medical]
TSGene81501
GENETestsDCSTAMP
Huge Navigator DCSTAMP [HugePedia]
snp3D : Map Gene to Disease81501
BioCentury BCIQDCSTAMP
ClinGenDCSTAMP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81501
Chemical/Pharm GKB GenePA134938623
Clinical trialDCSTAMP
Miscellaneous
canSAR (ICR)DCSTAMP (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDCSTAMP
EVEXDCSTAMP
GoPubMedDCSTAMP
iHOPDCSTAMP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 30 14:58:31 CEST 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.