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DCTD (dCMP deaminase)

Identity

Other alias-
HGNC (Hugo) DCTD
LocusID (NCBI) 1635
Atlas_Id 40275
Location 4q35.1  [Link to chromosome band 4q35]
Location_base_pair Starts at 182890091 and ends at 182917477 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DCTD (4q35.1) / DCTD (4q35.1)DCTD (4q35.1) / ECE2 (3q27.1)GATC (12q24.31) / DCTD (4q35.1)
RNF4 (4p16.3) / DCTD (4q35.1)DCTD 4q35.1 / ECE2 3q27.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DCTD   2710
Cards
Entrez_Gene (NCBI)DCTD  1635  dCMP deaminase
Aliases
GeneCards (Weizmann)DCTD
Ensembl hg19 (Hinxton)ENSG00000129187 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000129187 [Gene_View]  chr4:182890091-182917477 [Contig_View]  DCTD [Vega]
ICGC DataPortalENSG00000129187
TCGA cBioPortalDCTD
AceView (NCBI)DCTD
Genatlas (Paris)DCTD
WikiGenes1635
SOURCE (Princeton)DCTD
Genetics Home Reference (NIH)DCTD
Genomic and cartography
GoldenPath hg38 (UCSC)DCTD  -     chr4:182890091-182917477 -  4q35.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DCTD  -     4q35.1   [Description]    (hg19-Feb_2009)
EnsemblDCTD - 4q35.1 [CytoView hg19]  DCTD - 4q35.1 [CytoView hg38]
Mapping of homologs : NCBIDCTD [Mapview hg19]  DCTD [Mapview hg38]
OMIM607638   
Gene and transcription
Genbank (Entrez)AK293135 AK310788 AK313221 BC001286 BC088357
RefSeq transcript (Entrez)NM_001012732 NM_001921
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DCTD
Cluster EST : UnigeneHs.183850 [ NCBI ]
CGAP (NCI)Hs.183850
Alternative Splicing GalleryENSG00000129187
Gene ExpressionDCTD [ NCBI-GEO ]   DCTD [ EBI - ARRAY_EXPRESS ]   DCTD [ SEEK ]   DCTD [ MEM ]
Gene Expression Viewer (FireBrowse)DCTD [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1635
GTEX Portal (Tissue expression)DCTD
Protein : pattern, domain, 3D structure
UniProt/SwissProtP32321   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP32321  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP32321
Splice isoforms : SwissVarP32321
Catalytic activity : Enzyme3.5.4.12 [ Enzyme-Expasy ]   3.5.4.123.5.4.12 [ IntEnz-EBI ]   3.5.4.12 [ BRENDA ]   3.5.4.12 [ KEGG ]   
PhosPhoSitePlusP32321
Domaine pattern : Prosite (Expaxy)CYT_DCMP_DEAMINASES_1 (PS00903)    CYT_DCMP_DEAMINASES_2 (PS51747)   
Domains : Interpro (EBI)APOBEC/CMP_deaminase_Zn-bd    CMP_dCMP_Zn-bd    Cytidine_deaminase-like    dCMP_deaminase    dCMP_deaminase-rel   
Domain families : Pfam (Sanger)dCMP_cyt_deam_1 (PF00383)   
Domain families : Pfam (NCBI)pfam00383   
Conserved Domain (NCBI)DCTD
DMDM Disease mutations1635
Blocks (Seattle)DCTD
PDB (SRS)2W4L   
PDB (PDBSum)2W4L   
PDB (IMB)2W4L   
PDB (RSDB)2W4L   
Structural Biology KnowledgeBase2W4L   
SCOP (Structural Classification of Proteins)2W4L   
CATH (Classification of proteins structures)2W4L   
SuperfamilyP32321
Human Protein AtlasENSG00000129187
Peptide AtlasP32321
HPRD09623
IPIIPI00296863   IPI00554705   IPI00910904   IPI00965246   IPI00964881   IPI00968301   IPI00966586   IPI00965742   IPI00964327   IPI00966297   IPI00964421   IPI00965278   IPI00966997   
Protein Interaction databases
DIP (DOE-UCLA)P32321
IntAct (EBI)P32321
FunCoupENSG00000129187
BioGRIDDCTD
STRING (EMBL)DCTD
ZODIACDCTD
Ontologies - Pathways
QuickGOP32321
Ontology : AmiGOdCMP deaminase activity  protein binding  cytosol  pyrimidine nucleotide metabolic process  zinc ion binding  nucleotide biosynthetic process  identical protein binding  pyrimidine nucleoside biosynthetic process  extracellular exosome  
Ontology : EGO-EBIdCMP deaminase activity  protein binding  cytosol  pyrimidine nucleotide metabolic process  zinc ion binding  nucleotide biosynthetic process  identical protein binding  pyrimidine nucleoside biosynthetic process  extracellular exosome  
Pathways : KEGGPyrimidine metabolism   
NDEx NetworkDCTD
Atlas of Cancer Signalling NetworkDCTD
Wikipedia pathwaysDCTD
Orthology - Evolution
OrthoDB1635
GeneTree (enSembl)ENSG00000129187
Phylogenetic Trees/Animal Genes : TreeFamDCTD
HOVERGENP32321
HOGENOMP32321
Homologs : HomoloGeneDCTD
Homology/Alignments : Family Browser (UCSC)DCTD
Gene fusions - Rearrangements
Fusion : MitelmanDCTD/ECE2 [4q35.1/3q27.1]  
Fusion: TCGADCTD 4q35.1 ECE2 3q27.1 GBM
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDCTD [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DCTD
dbVarDCTD
ClinVarDCTD
1000_GenomesDCTD 
Exome Variant ServerDCTD
ExAC (Exome Aggregation Consortium)DCTD (select the gene name)
Genetic variants : HAPMAP1635
Genomic Variants (DGV)DCTD [DGVbeta]
DECIPHERDCTD [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDCTD 
Mutations
ICGC Data PortalDCTD 
TCGA Data PortalDCTD 
Broad Tumor PortalDCTD
OASIS PortalDCTD [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDCTD  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDCTD
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DCTD
DgiDB (Drug Gene Interaction Database)DCTD
DoCM (Curated mutations)DCTD (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DCTD (select a term)
intoGenDCTD
Cancer3DDCTD(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607638   
Orphanet
MedgenDCTD
Genetic Testing Registry DCTD
NextProtP32321 [Medical]
TSGene1635
GENETestsDCTD
Target ValidationDCTD
Huge Navigator DCTD [HugePedia]
snp3D : Map Gene to Disease1635
BioCentury BCIQDCTD
ClinGenDCTD
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1635
Chemical/Pharm GKB GenePA138
Clinical trialDCTD
Miscellaneous
canSAR (ICR)DCTD (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDCTD
EVEXDCTD
GoPubMedDCTD
iHOPDCTD
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:30:45 CEST 2017

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