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DCTN5 (dynactin subunit 5)

Identity

Alias_namesdynactin 5 (p25)
Alias_symbol (synonym)MGC3248
p25
Other alias-
HGNC (Hugo) DCTN5
LocusID (NCBI) 84516
Atlas_Id 62339
Location 16p12.2  [Link to chromosome band 16p12]
Location_base_pair Starts at 23641366 and ends at 23651147 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GLYR1 (16p13.3) / DCTN5 (16p12.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DCTN5   24594
Cards
Entrez_Gene (NCBI)DCTN5  84516  dynactin subunit 5
Aliases
GeneCards (Weizmann)DCTN5
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr16:23641366-23651147 [Contig_View]  DCTN5 [Vega]
TCGA cBioPortalDCTN5
AceView (NCBI)DCTN5
Genatlas (Paris)DCTN5
WikiGenes84516
SOURCE (Princeton)DCTN5
Genetics Home Reference (NIH)DCTN5
Genomic and cartography
GoldenPath hg38 (UCSC)DCTN5  -     chr16:23641366-23651147 +  16p12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DCTN5  -     16p12.2   [Description]    (hg19-Feb_2009)
EnsemblDCTN5 - 16p12.2 [CytoView hg19]  DCTN5 - 16p12.2 [CytoView hg38]
Mapping of homologs : NCBIDCTN5 [Mapview hg19]  DCTN5 [Mapview hg38]
OMIM612962   
Gene and transcription
Genbank (Entrez)AK027387 AK126469 AK292843 AK299631 BC004191
RefSeq transcript (Entrez)NM_001199011 NM_001199743 NM_032486
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DCTN5
Cluster EST : UnigeneHs.435941 [ NCBI ]
CGAP (NCI)Hs.435941
Gene ExpressionDCTN5 [ NCBI-GEO ]   DCTN5 [ EBI - ARRAY_EXPRESS ]   DCTN5 [ SEEK ]   DCTN5 [ MEM ]
Gene Expression Viewer (FireBrowse)DCTN5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84516
GTEX Portal (Tissue expression)DCTN5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BTE1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BTE1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BTE1
Splice isoforms : SwissVarQ9BTE1
PhosPhoSitePlusQ9BTE1
Domains : Interpro (EBI)Hexapep    Trimer_LpxA-like   
Domain families : Pfam (Sanger)Hexapep (PF00132)   
Domain families : Pfam (NCBI)pfam00132   
Conserved Domain (NCBI)DCTN5
DMDM Disease mutations84516
Blocks (Seattle)DCTN5
SuperfamilyQ9BTE1
Peptide AtlasQ9BTE1
HPRD14551
IPIIPI00032498   IPI00909903   IPI00981983   IPI00979016   IPI00655608   
Protein Interaction databases
DIP (DOE-UCLA)Q9BTE1
IntAct (EBI)Q9BTE1
BioGRIDDCTN5
STRING (EMBL)DCTN5
ZODIACDCTN5
Ontologies - Pathways
QuickGOQ9BTE1
Ontology : AmiGOcondensed chromosome kinetochore  ventricular septum development  protein binding  nucleoplasm  centrosome  cytosol  ER to Golgi vesicle-mediated transport  antigen processing and presentation of exogenous peptide antigen via MHC class II  nuclear membrane  aorta development  coronary vasculature development  
Ontology : EGO-EBIcondensed chromosome kinetochore  ventricular septum development  protein binding  nucleoplasm  centrosome  cytosol  ER to Golgi vesicle-mediated transport  antigen processing and presentation of exogenous peptide antigen via MHC class II  nuclear membrane  aorta development  coronary vasculature development  
Pathways : KEGGVasopressin-regulated water reabsorption   
NDEx NetworkDCTN5
Atlas of Cancer Signalling NetworkDCTN5
Wikipedia pathwaysDCTN5
Orthology - Evolution
OrthoDB84516
Phylogenetic Trees/Animal Genes : TreeFamDCTN5
HOVERGENQ9BTE1
HOGENOMQ9BTE1
Homologs : HomoloGeneDCTN5
Homology/Alignments : Family Browser (UCSC)DCTN5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDCTN5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DCTN5
dbVarDCTN5
ClinVarDCTN5
1000_GenomesDCTN5 
Exome Variant ServerDCTN5
ExAC (Exome Aggregation Consortium)DCTN5 (select the gene name)
Genetic variants : HAPMAP84516
Genomic Variants (DGV)DCTN5 [DGVbeta]
DECIPHERDCTN5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDCTN5 
Mutations
ICGC Data PortalDCTN5 
TCGA Data PortalDCTN5 
Broad Tumor PortalDCTN5
OASIS PortalDCTN5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDCTN5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDCTN5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DCTN5
DgiDB (Drug Gene Interaction Database)DCTN5
DoCM (Curated mutations)DCTN5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DCTN5 (select a term)
intoGenDCTN5
Cancer3DDCTN5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612962   
Orphanet
MedgenDCTN5
Genetic Testing Registry DCTN5
NextProtQ9BTE1 [Medical]
TSGene84516
GENETestsDCTN5
Target ValidationDCTN5
Huge Navigator DCTN5 [HugePedia]
snp3D : Map Gene to Disease84516
BioCentury BCIQDCTN5
ClinGenDCTN5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84516
Chemical/Pharm GKB GenePA142672007
Clinical trialDCTN5
Miscellaneous
canSAR (ICR)DCTN5 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDCTN5
EVEXDCTN5
GoPubMedDCTN5
iHOPDCTN5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:05:56 CEST 2017

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