Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

DCUN1D2 (defective in cullin neddylation 1 domain containing 2)

Identity

Alias_namesC13orf17
chromosome 13 open reading frame 17
DCN1, defective in cullin neddylation 1, domain containing 2 (S. cerevisiae)
Alias_symbol (synonym)FLJ10704
FLJ20092
Other alias
HGNC (Hugo) DCUN1D2
LocusID (NCBI) 55208
Atlas_Id 62342
Location 13q34  [Link to chromosome band 13q34]
Location_base_pair Starts at 113455819 and ends at 113490708 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DCUN1D2 (13q34) / FAM45A (10q26.11)DCUN1D2 (13q34) / TFDP1 (13q34)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DCUN1D2   20328
Cards
Entrez_Gene (NCBI)DCUN1D2  55208  defective in cullin neddylation 1 domain containing 2
AliasesC13orf17
GeneCards (Weizmann)DCUN1D2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr13:113455819-113490708 [Contig_View]  DCUN1D2 [Vega]
TCGA cBioPortalDCUN1D2
AceView (NCBI)DCUN1D2
Genatlas (Paris)DCUN1D2
WikiGenes55208
SOURCE (Princeton)DCUN1D2
Genetics Home Reference (NIH)DCUN1D2
Genomic and cartography
GoldenPath hg38 (UCSC)DCUN1D2  -     chr13:113455819-113490708 -  13q34   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DCUN1D2  -     13q34   [Description]    (hg19-Feb_2009)
EnsemblDCUN1D2 - 13q34 [CytoView hg19]  DCUN1D2 - 13q34 [CytoView hg38]
Mapping of homologs : NCBIDCUN1D2 [Mapview hg19]  DCUN1D2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK000099 AK001566 BC056669 BM836766 HQ447643
RefSeq transcript (Entrez)NM_001014283 NM_018185
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DCUN1D2
Cluster EST : UnigeneHs.682987 [ NCBI ]
CGAP (NCI)Hs.682987
Gene ExpressionDCUN1D2 [ NCBI-GEO ]   DCUN1D2 [ EBI - ARRAY_EXPRESS ]   DCUN1D2 [ SEEK ]   DCUN1D2 [ MEM ]
Gene Expression Viewer (FireBrowse)DCUN1D2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55208
GTEX Portal (Tissue expression)DCUN1D2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6PH85   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6PH85  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6PH85
Splice isoforms : SwissVarQ6PH85
PhosPhoSitePlusQ6PH85
Domaine pattern : Prosite (Expaxy)DCUN1 (PS51229)   
Domains : Interpro (EBI)DCN-prot    PONY_dom    UBA-like   
Domain families : Pfam (Sanger)Cullin_binding (PF03556)   
Domain families : Pfam (NCBI)pfam03556   
Conserved Domain (NCBI)DCUN1D2
DMDM Disease mutations55208
Blocks (Seattle)DCUN1D2
PDB (SRS)4GAO   
PDB (PDBSum)4GAO   
PDB (IMB)4GAO   
PDB (RSDB)4GAO   
Structural Biology KnowledgeBase4GAO   
SCOP (Structural Classification of Proteins)4GAO   
CATH (Classification of proteins structures)4GAO   
SuperfamilyQ6PH85
Peptide AtlasQ6PH85
HPRD12614
IPIIPI00008294   IPI00018872   IPI00642903   IPI00946307   IPI00946304   IPI00947455   IPI00946638   IPI00947278   
Protein Interaction databases
DIP (DOE-UCLA)Q6PH85
IntAct (EBI)Q6PH85
BioGRIDDCUN1D2
STRING (EMBL)DCUN1D2
ZODIACDCUN1D2
Ontologies - Pathways
QuickGOQ6PH85
Ontology : AmiGOubiquitin ligase complex  ubiquitin conjugating enzyme binding  ubiquitin-like protein binding  protein neddylation  positive regulation of ubiquitin-protein transferase activity  cullin family protein binding  
Ontology : EGO-EBIubiquitin ligase complex  ubiquitin conjugating enzyme binding  ubiquitin-like protein binding  protein neddylation  positive regulation of ubiquitin-protein transferase activity  cullin family protein binding  
NDEx NetworkDCUN1D2
Atlas of Cancer Signalling NetworkDCUN1D2
Wikipedia pathwaysDCUN1D2
Orthology - Evolution
OrthoDB55208
Phylogenetic Trees/Animal Genes : TreeFamDCUN1D2
HOVERGENQ6PH85
HOGENOMQ6PH85
Homologs : HomoloGeneDCUN1D2
Homology/Alignments : Family Browser (UCSC)DCUN1D2
Gene fusions - Rearrangements
Tumor Fusion PortalDCUN1D2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDCUN1D2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DCUN1D2
dbVarDCUN1D2
ClinVarDCUN1D2
1000_GenomesDCUN1D2 
Exome Variant ServerDCUN1D2
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP55208
Genomic Variants (DGV)DCUN1D2 [DGVbeta]
DECIPHERDCUN1D2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDCUN1D2 
Mutations
ICGC Data PortalDCUN1D2 
TCGA Data PortalDCUN1D2 
Broad Tumor PortalDCUN1D2
OASIS PortalDCUN1D2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDCUN1D2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDCUN1D2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DCUN1D2
DgiDB (Drug Gene Interaction Database)DCUN1D2
DoCM (Curated mutations)DCUN1D2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DCUN1D2 (select a term)
intoGenDCUN1D2
Cancer3DDCUN1D2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETDCUN1D2
MedgenDCUN1D2
Genetic Testing Registry DCUN1D2
NextProtQ6PH85 [Medical]
TSGene55208
GENETestsDCUN1D2
Target ValidationDCUN1D2
Huge Navigator DCUN1D2 [HugePedia]
snp3D : Map Gene to Disease55208
BioCentury BCIQDCUN1D2
ClinGenDCUN1D2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55208
Chemical/Pharm GKB GenePA134941036
Clinical trialDCUN1D2
Miscellaneous
canSAR (ICR)DCUN1D2 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDCUN1D2
EVEXDCUN1D2
GoPubMedDCUN1D2
iHOPDCUN1D2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:27:54 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.