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DCUN1D3 (defective in cullin neddylation 1 domain containing 3)

Identity

Alias_namesDCN1
Alias_symbol (synonym)MGC48972
FLJ41725
DKFZp686O0290
SCCRO3
Other alias44M2.4
HGNC (Hugo) DCUN1D3
LocusID (NCBI) 123879
Atlas_Id 55073
Location 16p12.3  [Link to chromosome band 16p12]
Location_base_pair Starts at 20869396 and ends at 20911561 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DCUN1D3   28734
Cards
Entrez_Gene (NCBI)DCUN1D3  123879  defective in cullin neddylation 1 domain containing 3
Aliases44M2.4; SCCRO3
GeneCards (Weizmann)DCUN1D3
Ensembl hg19 (Hinxton)ENSG00000188215 [Gene_View]  chr16:20869396-20911561 [Contig_View]  DCUN1D3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000188215 [Gene_View]  chr16:20869396-20911561 [Contig_View]  DCUN1D3 [Vega]
ICGC DataPortalENSG00000188215
TCGA cBioPortalDCUN1D3
AceView (NCBI)DCUN1D3
Genatlas (Paris)DCUN1D3
WikiGenes123879
SOURCE (Princeton)DCUN1D3
Genetics Home Reference (NIH)DCUN1D3
Genomic and cartography
GoldenPath hg19 (UCSC)DCUN1D3  -     chr16:20869396-20911561 -  16p12.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)DCUN1D3  -     16p12.3   [Description]    (hg38-Dec_2013)
EnsemblDCUN1D3 - 16p12.3 [CytoView hg19]  DCUN1D3 - 16p12.3 [CytoView hg38]
Mapping of homologs : NCBIDCUN1D3 [Mapview hg19]  DCUN1D3 [Mapview hg38]
OMIM616167   
Gene and transcription
Genbank (Entrez)AK027199 AK123719 AY364247 BC040442 BX648998
RefSeq transcript (Entrez)NM_173475
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_187260 NW_004929400
Consensus coding sequences : CCDS (NCBI)DCUN1D3
Cluster EST : UnigeneHs.592571 [ NCBI ]
CGAP (NCI)Hs.592571
Alternative Splicing GalleryENSG00000188215
Gene ExpressionDCUN1D3 [ NCBI-GEO ]   DCUN1D3 [ EBI - ARRAY_EXPRESS ]   DCUN1D3 [ SEEK ]   DCUN1D3 [ MEM ]
Gene Expression Viewer (FireBrowse)DCUN1D3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)123879
GTEX Portal (Tissue expression)DCUN1D3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IWE4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IWE4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IWE4
Splice isoforms : SwissVarQ8IWE4
PhosPhoSitePlusQ8IWE4
Domaine pattern : Prosite (Expaxy)DCUN1 (PS51229)   
Domains : Interpro (EBI)DCN-prot    PONY_dom   
Domain families : Pfam (Sanger)Cullin_binding (PF03556)   
Domain families : Pfam (NCBI)pfam03556   
Conserved Domain (NCBI)DCUN1D3
DMDM Disease mutations123879
Blocks (Seattle)DCUN1D3
PDB (SRS)4GBA   
PDB (PDBSum)4GBA   
PDB (IMB)4GBA   
PDB (RSDB)4GBA   
Structural Biology KnowledgeBase4GBA   
SCOP (Structural Classification of Proteins)4GBA   
CATH (Classification of proteins structures)4GBA   
SuperfamilyQ8IWE4
Human Protein AtlasENSG00000188215
Peptide AtlasQ8IWE4
HPRD14660
IPIIPI00217282   
Protein Interaction databases
DIP (DOE-UCLA)Q8IWE4
IntAct (EBI)Q8IWE4
FunCoupENSG00000188215
BioGRIDDCUN1D3
STRING (EMBL)DCUN1D3
ZODIACDCUN1D3
Ontologies - Pathways
QuickGOQ8IWE4
Ontology : AmiGOubiquitin ligase complex  molecular_function  plasma membrane  response to UV-C  response to gamma radiation  negative regulation of cell growth  ubiquitin conjugating enzyme binding  ubiquitin-like protein binding  positive regulation of apoptotic process  protein neddylation  perinuclear region of cytoplasm  positive regulation of ubiquitin-protein transferase activity  cullin family protein binding  
Ontology : EGO-EBIubiquitin ligase complex  molecular_function  plasma membrane  response to UV-C  response to gamma radiation  negative regulation of cell growth  ubiquitin conjugating enzyme binding  ubiquitin-like protein binding  positive regulation of apoptotic process  protein neddylation  perinuclear region of cytoplasm  positive regulation of ubiquitin-protein transferase activity  cullin family protein binding  
NDEx NetworkDCUN1D3
Atlas of Cancer Signalling NetworkDCUN1D3
Wikipedia pathwaysDCUN1D3
Orthology - Evolution
OrthoDB123879
GeneTree (enSembl)ENSG00000188215
Phylogenetic Trees/Animal Genes : TreeFamDCUN1D3
HOVERGENQ8IWE4
HOGENOMQ8IWE4
Homologs : HomoloGeneDCUN1D3
Homology/Alignments : Family Browser (UCSC)DCUN1D3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDCUN1D3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DCUN1D3
dbVarDCUN1D3
ClinVarDCUN1D3
1000_GenomesDCUN1D3 
Exome Variant ServerDCUN1D3
ExAC (Exome Aggregation Consortium)DCUN1D3 (select the gene name)
Genetic variants : HAPMAP123879
Genomic Variants (DGV)DCUN1D3 [DGVbeta]
DECIPHER (Syndromes)16:20869396-20911561  ENSG00000188215
CONAN: Copy Number AnalysisDCUN1D3 
Mutations
ICGC Data PortalDCUN1D3 
TCGA Data PortalDCUN1D3 
Broad Tumor PortalDCUN1D3
OASIS PortalDCUN1D3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDCUN1D3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDCUN1D3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DCUN1D3
DgiDB (Drug Gene Interaction Database)DCUN1D3
DoCM (Curated mutations)DCUN1D3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DCUN1D3 (select a term)
intoGenDCUN1D3
Cancer3DDCUN1D3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616167   
Orphanet
MedgenDCUN1D3
Genetic Testing Registry DCUN1D3
NextProtQ8IWE4 [Medical]
TSGene123879
GENETestsDCUN1D3
Huge Navigator DCUN1D3 [HugePedia]
snp3D : Map Gene to Disease123879
BioCentury BCIQDCUN1D3
ClinGenDCUN1D3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD123879
Chemical/Pharm GKB GenePA142672009
Clinical trialDCUN1D3
Miscellaneous
canSAR (ICR)DCUN1D3 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDCUN1D3
EVEXDCUN1D3
GoPubMedDCUN1D3
iHOPDCUN1D3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 30 14:58:32 CEST 2017

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