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DDA1 (DET1 and DDB1 associated 1)

Identity

Alias_namesC19orf58
chromosome 19 open reading frame 58
Alias_symbol (synonym)PCIA1
MGC2594
Other alias
HGNC (Hugo) DDA1
LocusID (NCBI) 79016
Atlas_Id 50852
Location 19p13.11  [Link to chromosome band 19p13]
Location_base_pair Starts at 17309528 and ends at 17323297 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DDA1 (19p13.11) / RPS8 (1p34.1)MRPL34 (19p13.11) / DDA1 (19p13.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DDA1   28360
Cards
Entrez_Gene (NCBI)DDA1  79016  DET1 and DDB1 associated 1
AliasesC19orf58; PCIA1
GeneCards (Weizmann)DDA1
Ensembl hg19 (Hinxton)ENSG00000130311 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000130311 [Gene_View]  chr19:17309528-17323297 [Contig_View]  DDA1 [Vega]
ICGC DataPortalENSG00000130311
TCGA cBioPortalDDA1
AceView (NCBI)DDA1
Genatlas (Paris)DDA1
WikiGenes79016
SOURCE (Princeton)DDA1
Genetics Home Reference (NIH)DDA1
Genomic and cartography
GoldenPath hg38 (UCSC)DDA1  -     chr19:17309528-17323297 +  19p13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DDA1  -     19p13.11   [Description]    (hg19-Feb_2009)
EnsemblDDA1 - 19p13.11 [CytoView hg19]  DDA1 - 19p13.11 [CytoView hg38]
Mapping of homologs : NCBIDDA1 [Mapview hg19]  DDA1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AL832922 AY563006 BC000615 DQ090952
RefSeq transcript (Entrez)NM_024050
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DDA1
Cluster EST : UnigeneHs.466154 [ NCBI ]
CGAP (NCI)Hs.466154
Alternative Splicing GalleryENSG00000130311
Gene ExpressionDDA1 [ NCBI-GEO ]   DDA1 [ EBI - ARRAY_EXPRESS ]   DDA1 [ SEEK ]   DDA1 [ MEM ]
Gene Expression Viewer (FireBrowse)DDA1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79016
GTEX Portal (Tissue expression)DDA1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BW61   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BW61  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BW61
Splice isoforms : SwissVarQ9BW61
PhosPhoSitePlusQ9BW61
Domains : Interpro (EBI)DDA1    DDA1_N   
Domain families : Pfam (Sanger)DDA1 (PF10172)   
Domain families : Pfam (NCBI)pfam10172   
Conserved Domain (NCBI)DDA1
DMDM Disease mutations79016
Blocks (Seattle)DDA1
SuperfamilyQ9BW61
Human Protein AtlasENSG00000130311
Peptide AtlasQ9BW61
HPRD15107
IPIIPI00031563   IPI00921509   
Protein Interaction databases
DIP (DOE-UCLA)Q9BW61
IntAct (EBI)Q9BW61
FunCoupENSG00000130311
BioGRIDDDA1
STRING (EMBL)DDA1
ZODIACDDA1
Ontologies - Pathways
QuickGOQ9BW61
Ontology : AmiGOprotein binding  regulation of proteasomal ubiquitin-dependent protein catabolic process  
Ontology : EGO-EBIprotein binding  regulation of proteasomal ubiquitin-dependent protein catabolic process  
NDEx NetworkDDA1
Atlas of Cancer Signalling NetworkDDA1
Wikipedia pathwaysDDA1
Orthology - Evolution
OrthoDB79016
GeneTree (enSembl)ENSG00000130311
Phylogenetic Trees/Animal Genes : TreeFamDDA1
HOVERGENQ9BW61
HOGENOMQ9BW61
Homologs : HomoloGeneDDA1
Homology/Alignments : Family Browser (UCSC)DDA1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDDA1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DDA1
dbVarDDA1
ClinVarDDA1
1000_GenomesDDA1 
Exome Variant ServerDDA1
ExAC (Exome Aggregation Consortium)DDA1 (select the gene name)
Genetic variants : HAPMAP79016
Genomic Variants (DGV)DDA1 [DGVbeta]
DECIPHERDDA1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDDA1 
Mutations
ICGC Data PortalDDA1 
TCGA Data PortalDDA1 
Broad Tumor PortalDDA1
OASIS PortalDDA1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDDA1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDDA1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DDA1
DgiDB (Drug Gene Interaction Database)DDA1
DoCM (Curated mutations)DDA1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DDA1 (select a term)
intoGenDDA1
Cancer3DDDA1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenDDA1
Genetic Testing Registry DDA1
NextProtQ9BW61 [Medical]
TSGene79016
GENETestsDDA1
Target ValidationDDA1
Huge Navigator DDA1 [HugePedia]
snp3D : Map Gene to Disease79016
BioCentury BCIQDDA1
ClinGenDDA1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79016
Chemical/Pharm GKB GenePA162383418
Clinical trialDDA1
Miscellaneous
canSAR (ICR)DDA1 (select the gene name)
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDDA1
EVEXDDA1
GoPubMedDDA1
iHOPDDA1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:30:47 CEST 2017

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