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DDN (dendrin)

Identity

Alias_symbol (synonym)KIAA0749
Other alias-
HGNC (Hugo) DDN
LocusID (NCBI) 23109
Atlas_Id 62352
Location 12q13.12  [Link to chromosome band 12q13]
Location_base_pair Starts at 48995150 and ends at 48999305 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DDN (12q13.12) / MLST8 (16p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DDN   24458
Cards
Entrez_Gene (NCBI)DDN  23109  dendrin
Aliases
GeneCards (Weizmann)DDN
Ensembl hg19 (Hinxton)ENSG00000181418 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000181418 [Gene_View]  chr12:48995150-48999305 [Contig_View]  DDN [Vega]
ICGC DataPortalENSG00000181418
TCGA cBioPortalDDN
AceView (NCBI)DDN
Genatlas (Paris)DDN
WikiGenes23109
SOURCE (Princeton)DDN
Genetics Home Reference (NIH)DDN
Genomic and cartography
GoldenPath hg38 (UCSC)DDN  -     chr12:48995150-48999305 -  12q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DDN  -     12q13.12   [Description]    (hg19-Feb_2009)
EnsemblDDN - 12q13.12 [CytoView hg19]  DDN - 12q13.12 [CytoView hg38]
Mapping of homologs : NCBIDDN [Mapview hg19]  DDN [Mapview hg38]
OMIM610588   
Gene and transcription
Genbank (Entrez)AB018292 BC039264 BC136398 BC136399
RefSeq transcript (Entrez)NM_015086
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DDN
Cluster EST : UnigeneHs.591044 [ NCBI ]
CGAP (NCI)Hs.591044
Alternative Splicing GalleryENSG00000181418
Gene ExpressionDDN [ NCBI-GEO ]   DDN [ EBI - ARRAY_EXPRESS ]   DDN [ SEEK ]   DDN [ MEM ]
Gene Expression Viewer (FireBrowse)DDN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23109
GTEX Portal (Tissue expression)DDN
Protein : pattern, domain, 3D structure
UniProt/SwissProtO94850   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO94850  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO94850
Splice isoforms : SwissVarO94850
PhosPhoSitePlusO94850
Domains : Interpro (EBI)Dendrin   
Domain families : Pfam (Sanger)Dendrin (PF15498)   
Domain families : Pfam (NCBI)pfam15498   
Conserved Domain (NCBI)DDN
DMDM Disease mutations23109
Blocks (Seattle)DDN
SuperfamilyO94850
Human Protein AtlasENSG00000181418
Peptide AtlasO94850
HPRD10294
IPIIPI00241886   
Protein Interaction databases
DIP (DOE-UCLA)O94850
IntAct (EBI)O94850
FunCoupENSG00000181418
BioGRIDDDN
STRING (EMBL)DDN
ZODIACDDN
Ontologies - Pathways
QuickGOO94850
Ontology : AmiGORNA polymerase II core promoter proximal region sequence-specific DNA binding  transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding  protein binding  nucleus  cytoplasm  endoplasmic reticulum membrane  dendritic spine membrane  cell projection  perikaryon  positive regulation of transcription from RNA polymerase II promoter  
Ontology : EGO-EBIRNA polymerase II core promoter proximal region sequence-specific DNA binding  transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding  protein binding  nucleus  cytoplasm  endoplasmic reticulum membrane  dendritic spine membrane  cell projection  perikaryon  positive regulation of transcription from RNA polymerase II promoter  
NDEx NetworkDDN
Atlas of Cancer Signalling NetworkDDN
Wikipedia pathwaysDDN
Orthology - Evolution
OrthoDB23109
GeneTree (enSembl)ENSG00000181418
Phylogenetic Trees/Animal Genes : TreeFamDDN
HOVERGENO94850
HOGENOMO94850
Homologs : HomoloGeneDDN
Homology/Alignments : Family Browser (UCSC)DDN
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDDN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DDN
dbVarDDN
ClinVarDDN
1000_GenomesDDN 
Exome Variant ServerDDN
ExAC (Exome Aggregation Consortium)DDN (select the gene name)
Genetic variants : HAPMAP23109
Genomic Variants (DGV)DDN [DGVbeta]
DECIPHERDDN [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDDN 
Mutations
ICGC Data PortalDDN 
TCGA Data PortalDDN 
Broad Tumor PortalDDN
OASIS PortalDDN [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDDN  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDDN
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DDN
DgiDB (Drug Gene Interaction Database)DDN
DoCM (Curated mutations)DDN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DDN (select a term)
intoGenDDN
Cancer3DDDN(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610588   
Orphanet
MedgenDDN
Genetic Testing Registry DDN
NextProtO94850 [Medical]
TSGene23109
GENETestsDDN
Target ValidationDDN
Huge Navigator DDN [HugePedia]
snp3D : Map Gene to Disease23109
BioCentury BCIQDDN
ClinGenDDN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23109
Chemical/Pharm GKB GenePA134906790
Clinical trialDDN
Miscellaneous
canSAR (ICR)DDN (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDDN
EVEXDDN
GoPubMedDDN
iHOPDDN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:45:26 CEST 2017

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