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DDO (D-aspartate oxidase)

Identity

Other aliasDASOX
DDO-1
DDO-2
HGNC (Hugo) DDO
LocusID (NCBI) 8528
Atlas_Id 62353
Location 6q21  [Link to chromosome band 6q21]
Location_base_pair Starts at 110392180 and ends at 110415550 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DDO   2727
Cards
Entrez_Gene (NCBI)DDO  8528  D-aspartate oxidase
AliasesDASOX; DDO-1; DDO-2
GeneCards (Weizmann)DDO
Ensembl hg19 (Hinxton)ENSG00000203797 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000203797 [Gene_View]  chr6:110392180-110415550 [Contig_View]  DDO [Vega]
ICGC DataPortalENSG00000203797
TCGA cBioPortalDDO
AceView (NCBI)DDO
Genatlas (Paris)DDO
WikiGenes8528
SOURCE (Princeton)DDO
Genetics Home Reference (NIH)DDO
Genomic and cartography
GoldenPath hg38 (UCSC)DDO  -     chr6:110392180-110415550 -  6q21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DDO  -     6q21   [Description]    (hg19-Feb_2009)
EnsemblDDO - 6q21 [CytoView hg19]  DDO - 6q21 [CytoView hg38]
Mapping of homologs : NCBIDDO [Mapview hg19]  DDO [Mapview hg38]
OMIM124450   
Gene and transcription
Genbank (Entrez)AB496420 AK293029 AX786391 AX786392 BC032786
RefSeq transcript (Entrez)NM_003649 NM_004032
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DDO
Cluster EST : UnigeneHs.591348 [ NCBI ]
CGAP (NCI)Hs.591348
Alternative Splicing GalleryENSG00000203797
Gene ExpressionDDO [ NCBI-GEO ]   DDO [ EBI - ARRAY_EXPRESS ]   DDO [ SEEK ]   DDO [ MEM ]
Gene Expression Viewer (FireBrowse)DDO [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8528
GTEX Portal (Tissue expression)DDO
Human Protein AtlasENSG00000203797-DDO [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99489   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ99489  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ99489
Splice isoforms : SwissVarQ99489
PhosPhoSitePlusQ99489
Domaine pattern : Prosite (Expaxy)DAO (PS00677)   
Domains : Interpro (EBI)D-amino_acid_oxidase_CS    DAO    FAD-dep_OxRdtase    FAD/NAD-binding_dom   
Domain families : Pfam (Sanger)DAO (PF01266)   
Domain families : Pfam (NCBI)pfam01266   
Conserved Domain (NCBI)DDO
DMDM Disease mutations8528
Blocks (Seattle)DDO
SuperfamilyQ99489
Human Protein Atlas [tissue]ENSG00000203797-DDO [tissue]
Peptide AtlasQ99489
HPRD00498
IPIIPI00015389   IPI00215860   IPI00641084   IPI00937691   IPI00976874   
Protein Interaction databases
DIP (DOE-UCLA)Q99489
IntAct (EBI)Q99489
FunCoupENSG00000203797
BioGRIDDDO
STRING (EMBL)DDO
ZODIACDDO
Ontologies - Pathways
QuickGOQ99489
Ontology : AmiGO###############################################################################################################################################################################################################################################################                              
Ontology : EGO-EBI###############################################################################################################################################################################################################################################################                              
Pathways : KEGGAlanine and aspartate metabolism   
NDEx NetworkDDO
Atlas of Cancer Signalling NetworkDDO
Wikipedia pathwaysDDO
Orthology - Evolution
OrthoDB8528
GeneTree (enSembl)ENSG00000203797
Phylogenetic Trees/Animal Genes : TreeFamDDO
HOVERGENQ99489
HOGENOMQ99489
Homologs : HomoloGeneDDO
Homology/Alignments : Family Browser (UCSC)DDO
Gene fusions - Rearrangements
Fusion : QuiverDDO
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDDO [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DDO
dbVarDDO
ClinVarDDO
1000_GenomesDDO 
Exome Variant ServerDDO
ExAC (Exome Aggregation Consortium)ENSG00000203797
GNOMAD BrowserENSG00000203797
Genetic variants : HAPMAP8528
Genomic Variants (DGV)DDO [DGVbeta]
DECIPHERDDO [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDDO 
Mutations
ICGC Data PortalDDO 
TCGA Data PortalDDO 
Broad Tumor PortalDDO
OASIS PortalDDO [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDDO  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDDO
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DDO
DgiDB (Drug Gene Interaction Database)DDO
DoCM (Curated mutations)DDO (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DDO (select a term)
intoGenDDO
Cancer3DDDO(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM124450   
Orphanet
DisGeNETDDO
MedgenDDO
Genetic Testing Registry DDO
NextProtQ99489 [Medical]
TSGene8528
GENETestsDDO
Target ValidationDDO
Huge Navigator DDO [HugePedia]
snp3D : Map Gene to Disease8528
BioCentury BCIQDDO
ClinGenDDO
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8528
Chemical/Pharm GKB GenePA27194
Clinical trialDDO
Miscellaneous
canSAR (ICR)DDO (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDDO
EVEXDDO
GoPubMedDDO
iHOPDDO
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Feb 23 18:16:02 CET 2018

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