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DDX12P (DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 12, pseudogene)

Identity

Alias_namesDDX12
DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 12 (S.cerevisiae CHL1-like helicase)
DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 12
DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 12, pseudogene
Alias_symbol (synonym)CHLR2
Other alias
HGNC (Hugo) DDX12P
LocusID (NCBI) 440081
Atlas_Id 62368
Location 12p13.31  [Link to chromosome band 12p13]
Location_base_pair Starts at 9570301 and ends at 9600814 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DDX12P   2737
Cards
Entrez_Gene (NCBI)DDX12P  440081  DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 12, pseudogene
AliasesCHLR2; DDX12
GeneCards (Weizmann)DDX12P
Ensembl hg19 (Hinxton) [Gene_View]  chr12:9570301-9600814 [Contig_View]  DDX12P [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr12:9570301-9600814 [Contig_View]  DDX12P [Vega]
TCGA cBioPortalDDX12P
AceView (NCBI)DDX12P
Genatlas (Paris)DDX12P
WikiGenes440081
SOURCE (Princeton)DDX12P
Genetics Home Reference (NIH)DDX12P
Genomic and cartography
GoldenPath hg19 (UCSC)DDX12P  -     chr12:9570301-9600814 -  12p13.31   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)DDX12P  -     12p13.31   [Description]    (hg38-Dec_2013)
EnsemblDDX12P - 12p13.31 [CytoView hg19]  DDX12P - 12p13.31 [CytoView hg38]
Mapping of homologs : NCBIDDX12P [Mapview hg19]  DDX12P [Mapview hg38]
OMIM601151   
Gene and transcription
Genbank (Entrez)BC035635 BC065494 DQ786301 U33834
RefSeq transcript (Entrez)NM_004400
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_009714 NW_004929383
Consensus coding sequences : CCDS (NCBI)DDX12P
Cluster EST : UnigeneHs.504688 [ NCBI ]
CGAP (NCI)Hs.504688
Gene ExpressionDDX12P [ NCBI-GEO ]   DDX12P [ EBI - ARRAY_EXPRESS ]   DDX12P [ SEEK ]   DDX12P [ MEM ]
Gene Expression Viewer (FireBrowse)DDX12P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)440081
GTEX Portal (Tissue expression)DDX12P
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ92771   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ92771  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ92771
Splice isoforms : SwissVarQ92771
Catalytic activity : Enzyme3.6.4.13 [ Enzyme-Expasy ]   3.6.4.133.6.4.13 [ IntEnz-EBI ]   3.6.4.13 [ BRENDA ]   3.6.4.13 [ KEGG ]   
PhosPhoSitePlusQ92771
Domaine pattern : Prosite (Expaxy)HELICASE_ATP_BIND_2 (PS51193)   
Domains : Interpro (EBI)ATP-dep_Helicase_C    DDX11/DDX12    DEAD_2    DNA_helicase_DNA-repair_Rad3    Helic_SF1/SF2_ATP-bd_DinG/Rad3    Helicase-like_DEXD_c2    P-loop_NTPase   
Domain families : Pfam (Sanger)DEAD_2 (PF06733)    Helicase_C_2 (PF13307)   
Domain families : Pfam (NCBI)pfam06733    pfam13307   
Domain families : Smart (EMBL)DEXDc2 (SM00488)  HELICc2 (SM00491)  
Conserved Domain (NCBI)DDX12P
DMDM Disease mutations440081
Blocks (Seattle)DDX12P
SuperfamilyQ92771
Peptide AtlasQ92771
IPIIPI00023299   IPI01015216   
Protein Interaction databases
DIP (DOE-UCLA)Q92771
IntAct (EBI)Q92771
BioGRIDDDX12P
STRING (EMBL)DDX12P
ZODIACDDX12P
Ontologies - Pathways
QuickGOQ92771
Ontology : AmiGODNA binding  RNA binding  ATP-dependent DNA helicase activity  ATP binding  nucleus  nucleobase-containing compound metabolic process  cell cycle  DNA duplex unwinding  
Ontology : EGO-EBIDNA binding  RNA binding  ATP-dependent DNA helicase activity  ATP binding  nucleus  nucleobase-containing compound metabolic process  cell cycle  DNA duplex unwinding  
NDEx NetworkDDX12P
Atlas of Cancer Signalling NetworkDDX12P
Wikipedia pathwaysDDX12P
Orthology - Evolution
OrthoDB440081
Phylogenetic Trees/Animal Genes : TreeFamDDX12P
HOVERGENQ92771
HOGENOMQ92771
Homologs : HomoloGeneDDX12P
Homology/Alignments : Family Browser (UCSC)DDX12P
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDDX12P [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DDX12P
dbVarDDX12P
ClinVarDDX12P
1000_GenomesDDX12P 
Exome Variant ServerDDX12P
ExAC (Exome Aggregation Consortium)DDX12P (select the gene name)
Genetic variants : HAPMAP440081
Genomic Variants (DGV)DDX12P [DGVbeta]
DECIPHER (Syndromes)12:9570301-9600814  
CONAN: Copy Number AnalysisDDX12P 
Mutations
ICGC Data PortalDDX12P 
TCGA Data PortalDDX12P 
Broad Tumor PortalDDX12P
OASIS PortalDDX12P [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDDDX12P
BioMutasearch DDX12P
DgiDB (Drug Gene Interaction Database)DDX12P
DoCM (Curated mutations)DDX12P (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DDX12P (select a term)
intoGenDDX12P
Cancer3DDDX12P(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601151   
Orphanet
MedgenDDX12P
Genetic Testing Registry DDX12P
NextProtQ92771 [Medical]
TSGene440081
GENETestsDDX12P
Huge Navigator DDX12P [HugePedia]
snp3D : Map Gene to Disease440081
BioCentury BCIQDDX12P
ClinGenDDX12P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD440081
Chemical/Pharm GKB GenePA27203
Clinical trialDDX12P
Miscellaneous
canSAR (ICR)DDX12P (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDDX12P
EVEXDDX12P
GoPubMedDDX12P
iHOPDDX12P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:01:15 CET 2017

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