Atlas of Genetics and Cytogenetics in Oncology and Haematology


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DDX19A (DEAD-box helicase 19A)

Identity

Alias_namesDDX19L
DEAD (Asp-Glu-Ala-As) box polypeptide 19-like
DEAD (Asp-Glu-Ala-Asp) box polypeptide 19A
Alias_symbol (synonym)FLJ11126
Other aliasDDX19-DDX19L
HGNC (Hugo) DDX19A
LocusID (NCBI) 55308
Atlas_Id 47009
Location 16q22.1  [Link to chromosome band 16q22]
Location_base_pair Starts at 70346829 and ends at 70373383 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DDX19A (16q22.1) / ABCC11 (16q12.1)DDX19A (16q22.1) / UTP4 (16q22.1)DDX19A 16q22.1 / ABCC11 16q12.1
DDX19A 16q22.1 / CIRH1A 16q22.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DDX19A   25628
Cards
Entrez_Gene (NCBI)DDX19A  55308  DEAD-box helicase 19A
AliasesDDX19-DDX19L; DDX19L
GeneCards (Weizmann)DDX19A
Ensembl hg19 (Hinxton)ENSG00000168872 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168872 [Gene_View]  chr16:70346829-70373383 [Contig_View]  DDX19A [Vega]
ICGC DataPortalENSG00000168872
TCGA cBioPortalDDX19A
AceView (NCBI)DDX19A
Genatlas (Paris)DDX19A
WikiGenes55308
SOURCE (Princeton)DDX19A
Genetics Home Reference (NIH)DDX19A
Genomic and cartography
GoldenPath hg38 (UCSC)DDX19A  -     chr16:70346829-70373383 +  16q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DDX19A  -     16q22.1   [Description]    (hg19-Feb_2009)
EnsemblDDX19A - 16q22.1 [CytoView hg19]  DDX19A - 16q22.1 [CytoView hg38]
Mapping of homologs : NCBIDDX19A [Mapview hg19]  DDX19A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB209401 AI863086 AK001988 AK094061 AK125701
RefSeq transcript (Entrez)NM_001320522 NM_001320525 NM_001320526 NM_001320527 NM_018332
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DDX19A
Cluster EST : UnigeneHs.656037 [ NCBI ]
CGAP (NCI)Hs.656037
Alternative Splicing GalleryENSG00000168872
Gene ExpressionDDX19A [ NCBI-GEO ]   DDX19A [ EBI - ARRAY_EXPRESS ]   DDX19A [ SEEK ]   DDX19A [ MEM ]
Gene Expression Viewer (FireBrowse)DDX19A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55308
GTEX Portal (Tissue expression)DDX19A
Human Protein AtlasENSG00000168872-DDX19A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NUU7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NUU7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NUU7
Splice isoforms : SwissVarQ9NUU7
Catalytic activity : Enzyme3.6.4.13 [ Enzyme-Expasy ]   3.6.4.133.6.4.13 [ IntEnz-EBI ]   3.6.4.13 [ BRENDA ]   3.6.4.13 [ KEGG ]   
PhosPhoSitePlusQ9NUU7
Domaine pattern : Prosite (Expaxy)HELICASE_ATP_BIND_1 (PS51192)    HELICASE_CTER (PS51194)    Q_MOTIF (PS51195)   
Domains : Interpro (EBI)DEAD/DEAH_box_helicase_dom    Helicase_ATP-bd    Helicase_C    P-loop_NTPase    RNA_helicase_DEAD_Q_motif   
Domain families : Pfam (Sanger)DEAD (PF00270)    Helicase_C (PF00271)   
Domain families : Pfam (NCBI)pfam00270    pfam00271   
Domain families : Smart (EMBL)DEXDc (SM00487)  HELICc (SM00490)  
Conserved Domain (NCBI)DDX19A
DMDM Disease mutations55308
Blocks (Seattle)DDX19A
SuperfamilyQ9NUU7
Human Protein Atlas [tissue]ENSG00000168872-DDX19A [tissue]
Peptide AtlasQ9NUU7
HPRD07732
IPIIPI00019918   IPI01009735   IPI00155054   IPI01010082   IPI00556256   
Protein Interaction databases
DIP (DOE-UCLA)Q9NUU7
IntAct (EBI)Q9NUU7
FunCoupENSG00000168872
BioGRIDDDX19A
STRING (EMBL)DDX19A
ZODIACDDX19A
Ontologies - Pathways
QuickGOQ9NUU7
Ontology : AmiGOmolecular_function  RNA binding  ATP-dependent RNA helicase activity  protein binding  ATP binding  nuclear pore  cytoplasm  biological_process  RNA splicing  regulation of gene expression  RNA secondary structure unwinding  protein transport  membrane  nuclear membrane  mRNA transport  catalytic step 2 spliceosome  
Ontology : EGO-EBImolecular_function  RNA binding  ATP-dependent RNA helicase activity  protein binding  ATP binding  nuclear pore  cytoplasm  biological_process  RNA splicing  regulation of gene expression  RNA secondary structure unwinding  protein transport  membrane  nuclear membrane  mRNA transport  catalytic step 2 spliceosome  
NDEx NetworkDDX19A
Atlas of Cancer Signalling NetworkDDX19A
Wikipedia pathwaysDDX19A
Orthology - Evolution
OrthoDB55308
GeneTree (enSembl)ENSG00000168872
Phylogenetic Trees/Animal Genes : TreeFamDDX19A
HOVERGENQ9NUU7
HOGENOMQ9NUU7
Homologs : HomoloGeneDDX19A
Homology/Alignments : Family Browser (UCSC)DDX19A
Gene fusions - Rearrangements
Fusion : MitelmanDDX19A/ABCC11 [16q22.1/16q12.1]  
Fusion : MitelmanDDX19A/CIRH1A [16q22.1/16q22.1]  [t(16;16)(q22;q22)]  
Fusion: TCGA_MDACCDDX19A 16q22.1 ABCC11 16q12.1 LUAD
Fusion: TCGA_MDACCDDX19A 16q22.1 CIRH1A 16q22.1 KIRC
Tumor Fusion PortalDDX19A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDDX19A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DDX19A
dbVarDDX19A
ClinVarDDX19A
1000_GenomesDDX19A 
Exome Variant ServerDDX19A
ExAC (Exome Aggregation Consortium)ENSG00000168872
GNOMAD BrowserENSG00000168872
Genetic variants : HAPMAP55308
Genomic Variants (DGV)DDX19A [DGVbeta]
DECIPHERDDX19A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDDX19A 
Mutations
ICGC Data PortalDDX19A 
TCGA Data PortalDDX19A 
Broad Tumor PortalDDX19A
OASIS PortalDDX19A [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDDDX19A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DDX19A
DgiDB (Drug Gene Interaction Database)DDX19A
DoCM (Curated mutations)DDX19A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DDX19A (select a term)
intoGenDDX19A
Cancer3DDDX19A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETDDX19A
MedgenDDX19A
Genetic Testing Registry DDX19A
NextProtQ9NUU7 [Medical]
TSGene55308
GENETestsDDX19A
Target ValidationDDX19A
Huge Navigator DDX19A [HugePedia]
snp3D : Map Gene to Disease55308
BioCentury BCIQDDX19A
ClinGenDDX19A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55308
Chemical/Pharm GKB GenePA134894996
Clinical trialDDX19A
Miscellaneous
canSAR (ICR)DDX19A (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDDX19A
EVEXDDX19A
GoPubMedDDX19A
iHOPDDX19A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:10:12 CET 2017

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