DDX23 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 23)

Identity

Other names	MGC8416
	PRPF28
	U5-100K
	prp28
Hugo	DDX23
Location	12q13.12
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
Hugo	DDX23
GDB	DDX23
Entrez_Gene	DDX23  9416  DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
	Cards
GeneCards	DDX23
Ensembl	DDX23 [Search_View]   ENSG00000174243 [Gene_View]
Genatlas	DDX23
GeneLynx	DDX23
eGenome	DDX23
euGene	9416
	Genomic and cartography
GoldenPath	DDX23  -  12q13.12   chr12:47509807-47532224 -  12q13.12   [Description]    (hg18-March_2006)
Ensembl	DDX23 - 12q13.12 [CytoView]
NCBI	Mapview
HomoloGene	DDX23
	Gene and transcription
Genbank	AF026402 [ ENTREZ ]
Genbank	AK128428 [ ENTREZ ]
Genbank	AK292921 [ ENTREZ ]
Genbank	BC002366 [ ENTREZ ]
Genbank	CD709611 [ ENTREZ ]
RefSeq	NM_004818 [ SRS ]    NM_004818 [ ENTREZ ]
RefSeq	AC_000055 [ SRS ]    AC_000055 [ ENTREZ ]
RefSeq	NC_000012 [ SRS ]    NC_000012 [ ENTREZ ]
RefSeq	NT_029419 [ SRS ]    NT_029419 [ ENTREZ ]
RefSeq	NW_925351 [ SRS ]    NW_925351 [ ENTREZ ]
AceView	DDX23 AceView - NCBI
Unigene	Hs.130098 [ SRS ]    Hs.130098 [ NCBI ]     HS130098 [ spliceNest ]
Fast-db	6247 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	Q9BUQ8 [ SRS]    Q9BUQ8 [ EXPASY ]     Q9BUQ8 [ INTERPRO ]
Prosite	PS00039 DEAD_ATP_HELICASE [ SRS ]    PS00039 DEAD_ATP_HELICASE [ Expasy ]
Prosite	PS51192 HELICASE_ATP_BIND_1 [ SRS ]    PS51192 HELICASE_ATP_BIND_1 [ Expasy ]
Prosite	PS51194 HELICASE_CTER [ SRS ]    PS51194 HELICASE_CTER [ Expasy ]
Prosite	PS51195 Q_MOTIF [ SRS ]    PS51195 Q_MOTIF [ Expasy ]
Interpro	IPR014001 DEAD-like_N [ SRS ]    IPR014001 DEAD-like_N [ EBI ]
Interpro	IPR001650 DNA/RNA_helicase_C [ SRS ]    IPR001650 DNA/RNA_helicase_C [ EBI ]
Interpro	IPR011545 DNA/RNA_helicase_DEAD/DEAH_N [ SRS ]    IPR011545 DNA/RNA_helicase_DEAD/DEAH_N [ EBI ]
Interpro	IPR014021 Helicase_SF1/SF2_ATP-bd [ SRS ]    IPR014021 Helicase_SF1/SF2_ATP-bd [ EBI ]
Interpro	IPR000629 RNA-helicase_DEAD-box_CS [ SRS ]    IPR000629 RNA-helicase_DEAD-box_CS [ EBI ]
Interpro	IPR014014 RNA_helicase_DEAD_Q_motif [ SRS ]    IPR014014 RNA_helicase_DEAD_Q_motif [ EBI ]
CluSTr	Q9BUQ8
Pfam	PF00270 DEAD [ SRS ]    PF00270 DEAD [ Sanger ]    pfam00270 [ NCBI-CDD ]
Pfam	PF00271 Helicase_C [ SRS ]    PF00271 Helicase_C [ Sanger ]    pfam00271 [ NCBI-CDD ]
Smart	SM00487 DEXDc [EMBL]
Smart	SM00490 HELICc [EMBL]
Blocks	Q9BUQ8
HPRD	09908
	Protein Interaction databases
DIP	Q9BUQ8
IntAct	Q9BUQ8
	Polymorphism : SNP, mutations, diseases
SNP	DDX23 [dbSNP-NCBI]
SNP	NM_004818 [SNP-NCI]
SNP	DDX23 [GeneSNPs - Utah]  DDX23] [HGBASE - SRS]
HAPMAP	DDX23 [HAPMAP]
COSMIC	DDX23 [Somatic mutation (COSMIC-CGP-Sanger)]
HGMD	DDX23
	General knowledge
Family Browser	DDX23 [UCSC Family Browser]
SOURCE	NM_004818
SMD	Hs.130098
SAGE	Hs.130098
Enzyme	3.6.1.- [ Enzyme-SRS ]   3.6.1.- [ Brenda-SRS ]   3.6.1.- [ KEGG ]   3.6.1.- [ WIT ]
GO	nucleotide binding [Amigo]  nucleotide binding
GO	cis assembly of U2-type pre-catalytic spliceosome [Amigo]  cis assembly of U2-type pre-catalytic spliceosome
GO	nucleic acid binding [Amigo]  nucleic acid binding
GO	ATP-dependent RNA helicase activity [Amigo]  ATP-dependent RNA helicase activity
GO	protein binding [Amigo]  protein binding
GO	ATP binding [Amigo]  ATP binding
GO	nucleus [Amigo]  nucleus
GO	spliceosome [Amigo]  spliceosome
GO	snRNP U5 [Amigo]  snRNP U5
GO	mRNA processing [Amigo]  mRNA processing
GO	RNA splicing [Amigo]  RNA splicing
GO	hydrolase activity [Amigo]  hydrolase activity
GO	RNA splicing factor activity, transesterification mechanism [Amigo]  RNA splicing factor activity, transesterification mechanism
KEGG	Starch and sucrose metabolism
KEGG	Folate biosynthesis
PubGene	DDX23
TreeFam	DDX23
CTD	9416 [Comparative Genomics Database]
	Other databases
	Probes
Probe	DDX23 Related clones (RZPD - Berlin)
	PubMed
PubMed	10 Pubmed reference(s) in LocusLink

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Thu May 22 20:03:17 2008