| Nomenclature | | HGNC (Hugo) | DDX23 17347 |
| Entrez_Gene (NCBI) | DDX23 9416 DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 |
| Cards | | GeneCards (Weizmann) | DDX23 |
| Ensembl (Hinxton) | ENSG00000174243 [Gene_View] chr12:49223539-49245957 [Contig_View] DDX23 [Vega] |
| AceView (NCBI) | DDX23 |
| Genatlas (Paris) | DDX23 |
| SOURCE (Stanford) | NM_004818 |
| Genomic and cartography | | GoldenPath (UCSC) | DDX23 - 12q13.12 chr12:49223539-49245957 - 12q13.12 [Description] (hg19-Feb_2009) |
| Ensembl | DDX23 - 12q13.12 [CytoView] |
| Mapping of homologs : NCBI | DDX23 [Mapview] |
| OMIM | 612172 |
| Gene and transcription |
| Genbank (Entrez) | AF026402 AK128428 AK292921 AK294877 AK312379 |
| RefSeq transcript (SRS) | NM_004818 |
| RefSeq transcript (Entrez) | NM_004818 |
| RefSeq genomic (SRS) | AC_000144 NC_000012 NC_018923 NT_029419 NW_001838057 NW_004078075 |
| RefSeq genomic (Entrez) | AC_000144 NC_000012 NC_018923 NT_029419 NW_001838057 NW_004078075 |
| Consensus coding sequences : CCDS (NCBI) | DDX23 |
| Cluster EST : Unigene | Hs.130098 [ SRS ] Hs.130098 [ NCBI ] |
| CGAP (NCI) | Hs.130098 |
| Alternative Splicing : Fast-db (Paris) | GSHG0007428 |
| Alternative Splicing Gallery | ENSG00000174243 |
| Gene Expression | DDX23 [ NCBI-GEO ] DDX23 [ EBI - ARRAY_EXPRESS ] |
| Protein : pattern, domain, 3D structure |
|---|
| UniProt/SwissProt | Q9BUQ8 (SRS) Q9BUQ8 (Uniprot) |
| NextProt | Q9BUQ8 |
| With graphics : InterPro | Q9BUQ8 |
| Splice isoforms : SwissVar | Q9BUQ8(Swissvar) |
| Domaine pattern : Prosite (SRS) | DEAD_ATP_HELICASE (PS00039) HELICASE_ATP_BIND_1 (PS51192) HELICASE_CTER (PS51194) Q_MOTIF (PS51195) |
| Domaine pattern : Prosite (Expaxy) | DEAD_ATP_HELICASE (PS00039) HELICASE_ATP_BIND_1 (PS51192) HELICASE_CTER (PS51194) Q_MOTIF (PS51195) |
| Domains : Interpro (SRS) | DNA/RNA_helicase_DEAD/DEAH_N Helicase_ATP-bd Helicase_C RNA-helicase_DEAD-box_CS RNA_helicase_DEAD_Q_motif |
| Domains : Interpro (EBI) | DNA/RNA_helicase_DEAD/DEAH_N Helicase_ATP-bd Helicase_C RNA-helicase_DEAD-box_CS RNA_helicase_DEAD_Q_motif |
| Related proteins : CluSTr | Q9BUQ8 |
| Domain families : Pfam (SRS) | DEAD (PF00270) Helicase_C (PF00271) |
| Domain families : Pfam (Sanger) | DEAD (PF00270) Helicase_C (PF00271) |
| Domain families : Pfam (NCBI) | pfam00270 pfam00271 |
| Domain families : Smart (EMBL) | DEXDc (SM00487) HELICc (SM00490) |
| DMDM | 9416 |
| Blocks (Seattle) | Q9BUQ8 |
| Human Protein Atlas | ENSG00000174243 |
| HPRD | 09908 |
| IPI | IPI00006725 IPI00903057 IPI01021148 IPI01020725 IPI01021504 IPI01020999 IPI01021791 |
| Protein Interaction databases |
|---|
| DIP (DOE-UCLA) | Q9BUQ8 |
| IntAct (EBI) | Q9BUQ8 |
| FunCoup | ENSG00000174243 |
| REACTOME | DDX23 |
| Protein Interaction Database | 9416 |
| BioGRID | DDX23 |
| InParanoid | Q9BUQ8 |
| Interologous Interaction database | Q9BUQ8 |
| IntegromeDB | DDX23 |
| Polymorphism : SNP, mutations, diseases | | SNP Single Nucleotide Polymorphism (NCBI) | DDX23 |
| SNP (GeneSNP Utah) | DDX23 |
| SNP : HGBase | DDX23 |
| Genetic variants : HAPMAP | DDX23 |
| Somatic Mutations in Cancer : COSMIC | DDX23 |
| CONAN: Copy Number Analysis | DDX23 |
| Mutations and Diseases : HGMD | DDX23 |
| OMIM | 612172 |
| GENETests | 612172 |
| Disease Genetic Association | DDX23 |
| Huge Navigator |
DDX23 [HugePedia] DDX23 [HugeCancerGEM] |
| Genomic Variants | DDX23 DDX23 [DGVbeta] |
| snp3D : Map Gene to Disease | 9416 |
| General knowledge |
|---|
| Homologs : HomoloGene | DDX23 |
| Homology/Alignments : Family Browser (UCSC) | DDX23 |
| Phylogenetic Trees/Animal Genes : TreeFam | DDX23 |
| Catalytic activity : Enzyme | 3.6.4.13 [ Enzyme-Expasy ] 3.6.4.13 [ Enzyme-SRS ] 3.6.4.13 [ IntEnz-EBI ] 3.6.4.13 [ BRENDA ] 3.6.4.13 [ KEGG ] |
| Chemical/Protein Interactions : CTD | 9416 |
| Chemical/Pharm GKB Gene | PA134934941 |
| Clinical trial | DDX23 |
| Cancer Resource (Charite) | ENSG00000174243 |
| Ontology : AmiGO | cis assembly of pre-catalytic spliceosome RNA splicing, via transesterification reactions mRNA splicing, via spliceosome mRNA splicing, via spliceosome nucleic acid binding ATP-dependent RNA helicase activity protein binding ATP binding nucleus nucleoplasm U5 snRNP nucleolus mitochondrion plasma membrane ATP-dependent helicase activity RNA splicing gene expression catalytic step 2 spliceosome |
| Ontology : EGO-EBI | cis assembly of pre-catalytic spliceosome RNA splicing, via transesterification reactions mRNA splicing, via spliceosome mRNA splicing, via spliceosome nucleic acid binding ATP-dependent RNA helicase activity protein binding ATP binding nucleus nucleoplasm U5 snRNP nucleolus mitochondrion plasma membrane ATP-dependent helicase activity RNA splicing gene expression catalytic step 2 spliceosome |
| Pathways : KEGG | Folate biosynthesisStarch and sucrose metabolism |
| Other databases | | Probes |
|---|
| Litterature | | PubMed | 33 Pubmed reference(s) in Entrez |
| PubGene | DDX23 |
| iHOP | DDX23 |