Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

DDX39B-AS1 (DDX39B antisense RNA 1)

Identity

Alias_namesDDX39B antisense RNA 1 (non-protein coding)
Other alias-
HGNC (Hugo) DDX39B-AS1
LocusID (NCBI) 106478957
Atlas_Id 77826
Location 6p21.33  [Link to chromosome band 6p21]
Location_base_pair Starts at 31542304 and ends at 31543138 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DDX39B-AS1   39771
Cards
Entrez_Gene (NCBI)DDX39B-AS1  106478957  DDX39B antisense RNA 1
Aliases
GeneCards (Weizmann)DDX39B-AS1
Ensembl hg19 (Hinxton)ENSG00000234006 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000234006 [Gene_View]  ENSG00000234006 [Sequence]  chr6:31542304-31543138 [Contig_View]  DDX39B-AS1 [Vega]
ICGC DataPortalENSG00000234006
TCGA cBioPortalDDX39B-AS1
AceView (NCBI)DDX39B-AS1
Genatlas (Paris)DDX39B-AS1
WikiGenes106478957
SOURCE (Princeton)DDX39B-AS1
Genetics Home Reference (NIH)DDX39B-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)DDX39B-AS1  -     chr6:31542304-31543138 +  6p21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DDX39B-AS1  -     6p21.33   [Description]    (hg19-Feb_2009)
EnsemblDDX39B-AS1 - 6p21.33 [CytoView hg19]  DDX39B-AS1 - 6p21.33 [CytoView hg38]
Mapping of homologs : NCBIDDX39B-AS1 [Mapview hg19]  DDX39B-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BU569825 BX509928
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000006 NC_018917 NG_012344 NT_113891 NT_167245 NT_167246 NT_167247 NT_167248 NT_167249
Consensus coding sequences : CCDS (NCBI)DDX39B-AS1
Alternative Splicing GalleryENSG00000234006
Gene ExpressionDDX39B-AS1 [ NCBI-GEO ]   DDX39B-AS1 [ EBI - ARRAY_EXPRESS ]   DDX39B-AS1 [ SEEK ]   DDX39B-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)DDX39B-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)106478957
GTEX Portal (Tissue expression)DDX39B-AS1
Human Protein AtlasENSG00000234006-DDX39B-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)DDX39B-AS1
DMDM Disease mutations106478957
Blocks (Seattle)DDX39B-AS1
Human Protein Atlas [tissue]ENSG00000234006-DDX39B-AS1 [tissue]
Protein Interaction databases
FunCoupENSG00000234006
BioGRIDDDX39B-AS1
STRING (EMBL)DDX39B-AS1
ZODIACDDX39B-AS1
Ontologies - Pathways
Huge Navigator DDX39B-AS1 [HugePedia]
snp3D : Map Gene to Disease106478957
BioCentury BCIQDDX39B-AS1
ClinGenDDX39B-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD106478957
Clinical trialDDX39B-AS1
Miscellaneous
canSAR (ICR)DDX39B-AS1 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineDDX39B-AS1
EVEXDDX39B-AS1
GoPubMedDDX39B-AS1
iHOPDDX39B-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:42:20 CEST 2018

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.