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DDX3Y (DEAD-box helicase 3, Y-linked)

Identity

Alias_namesDBY
DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide, Y chromosome
DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked
DEAD (Asp-Glu-Ala-Asp) box helicase 3, Y-linked
Other alias
HGNC (Hugo) DDX3Y
LocusID (NCBI) 8653
Atlas_Id 46904
Location Yq11.21  [Link to chromosome band Yq11]
Location_base_pair Starts at 15016019 and ends at 15030439 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
DDX3Y (Yq11.21) / DEPDC5 (22q12.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DDX3Y   2699
Cards
Entrez_Gene (NCBI)DDX3Y  8653  DEAD-box helicase 3, Y-linked
AliasesDBY
GeneCards (Weizmann)DDX3Y
Ensembl hg19 (Hinxton)ENSG00000067048 [Gene_View]  chrY:15016019-15030439 [Contig_View]  DDX3Y [Vega]
Ensembl hg38 (Hinxton)ENSG00000067048 [Gene_View]  chrY:15016019-15030439 [Contig_View]  DDX3Y [Vega]
ICGC DataPortalENSG00000067048
TCGA cBioPortalDDX3Y
AceView (NCBI)DDX3Y
Genatlas (Paris)DDX3Y
WikiGenes8653
SOURCE (Princeton)DDX3Y
Genetics Home Reference (NIH)DDX3Y
Genomic and cartography
GoldenPath hg19 (UCSC)DDX3Y  -     chrY:15016019-15030439 +  Yq11.21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)DDX3Y  -     Yq11.21   [Description]    (hg38-Dec_2013)
EnsemblDDX3Y - Yq11.21 [CytoView hg19]  DDX3Y - Yq11.21 [CytoView hg38]
Mapping of homologs : NCBIDDX3Y [Mapview hg19]  DDX3Y [Mapview hg38]
OMIM400010   415000   
Gene and transcription
Genbank (Entrez)AF000984 AF000985 AK296366 AK302172 AK303176
RefSeq transcript (Entrez)NM_001122665 NM_001302552 NM_004660
RefSeq genomic (Entrez)NC_000024 NG_012831 NT_011875
Consensus coding sequences : CCDS (NCBI)DDX3Y
Cluster EST : UnigeneHs.99120 [ NCBI ]
CGAP (NCI)Hs.99120
Alternative Splicing GalleryENSG00000067048
Gene ExpressionDDX3Y [ NCBI-GEO ]   DDX3Y [ EBI - ARRAY_EXPRESS ]   DDX3Y [ SEEK ]   DDX3Y [ MEM ]
Gene Expression Viewer (FireBrowse)DDX3Y [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8653
GTEX Portal (Tissue expression)DDX3Y
Protein : pattern, domain, 3D structure
UniProt/SwissProtO15523   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO15523  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO15523
Splice isoforms : SwissVarO15523
Catalytic activity : Enzyme3.6.4.13 [ Enzyme-Expasy ]   3.6.4.133.6.4.13 [ IntEnz-EBI ]   3.6.4.13 [ BRENDA ]   3.6.4.13 [ KEGG ]   
PhosPhoSitePlusO15523
Domaine pattern : Prosite (Expaxy)DEAD_ATP_HELICASE (PS00039)    HELICASE_ATP_BIND_1 (PS51192)    HELICASE_CTER (PS51194)    Q_MOTIF (PS51195)   
Domains : Interpro (EBI)DEAD/DEAH_box_helicase_dom    Helicase_ATP-bd    Helicase_C    P-loop_NTPase    RNA-helicase_DEAD-box_CS    RNA_helicase_DEAD_Q_motif   
Domain families : Pfam (Sanger)DEAD (PF00270)    Helicase_C (PF00271)   
Domain families : Pfam (NCBI)pfam00270    pfam00271   
Domain families : Smart (EMBL)DEXDc (SM00487)  HELICc (SM00490)  
Conserved Domain (NCBI)DDX3Y
DMDM Disease mutations8653
Blocks (Seattle)DDX3Y
SuperfamilyO15523
Human Protein AtlasENSG00000067048
Peptide AtlasO15523
HPRD02452
IPIIPI00293616   IPI00646152   IPI00908506   IPI00647597   
Protein Interaction databases
DIP (DOE-UCLA)O15523
IntAct (EBI)O15523
FunCoupENSG00000067048
BioGRIDDDX3Y
STRING (EMBL)DDX3Y
ZODIACDDX3Y
Ontologies - Pathways
QuickGOO15523
Ontology : AmiGODNA binding  RNA binding  ATP-dependent RNA helicase activity  ATP binding  nucleus  cytoplasm  translational initiation  chromosome segregation  regulation of gene expression  RNA secondary structure unwinding  membrane  cytoplasmic ribonucleoprotein granule  
Ontology : EGO-EBIDNA binding  RNA binding  ATP-dependent RNA helicase activity  ATP binding  nucleus  cytoplasm  translational initiation  chromosome segregation  regulation of gene expression  RNA secondary structure unwinding  membrane  cytoplasmic ribonucleoprotein granule  
NDEx NetworkDDX3Y
Atlas of Cancer Signalling NetworkDDX3Y
Wikipedia pathwaysDDX3Y
Orthology - Evolution
OrthoDB8653
GeneTree (enSembl)ENSG00000067048
Phylogenetic Trees/Animal Genes : TreeFamDDX3Y
HOVERGENO15523
HOGENOMO15523
Homologs : HomoloGeneDDX3Y
Homology/Alignments : Family Browser (UCSC)DDX3Y
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDDX3Y [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DDX3Y
dbVarDDX3Y
ClinVarDDX3Y
1000_GenomesDDX3Y 
Exome Variant ServerDDX3Y
ExAC (Exome Aggregation Consortium)DDX3Y (select the gene name)
Genetic variants : HAPMAP8653
Genomic Variants (DGV)DDX3Y [DGVbeta]
DECIPHER (Syndromes)Y:15016019-15030439  ENSG00000067048
CONAN: Copy Number AnalysisDDX3Y 
Mutations
ICGC Data PortalDDX3Y 
TCGA Data PortalDDX3Y 
Broad Tumor PortalDDX3Y
OASIS PortalDDX3Y [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDDX3Y  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDDX3Y
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DDX3Y
DgiDB (Drug Gene Interaction Database)DDX3Y
DoCM (Curated mutations)DDX3Y (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DDX3Y (select a term)
intoGenDDX3Y
Cancer3DDDX3Y(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM400010    415000   
Orphanet257   
MedgenDDX3Y
Genetic Testing Registry DDX3Y
NextProtO15523 [Medical]
TSGene8653
GENETestsDDX3Y
Huge Navigator DDX3Y [HugePedia]
snp3D : Map Gene to Disease8653
BioCentury BCIQDDX3Y
ClinGenDDX3Y
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8653
Chemical/Pharm GKB GenePA27168
Clinical trialDDX3Y
Miscellaneous
canSAR (ICR)DDX3Y (select the gene name)
Probes
Litterature
PubMed40 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDDX3Y
EVEXDDX3Y
GoPubMedDDX3Y
iHOPDDX3Y
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:02:58 CET 2017

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