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DDX51 (DEAD-box helicase 51)

Identity

Alias_namesDEAD (Asp-Glu-Ala-Asp) box polypeptide 51
Other alias-
HGNC (Hugo) DDX51
LocusID (NCBI) 317781
Atlas_Id 46985
Location 12q24.33  [Link to chromosome band 12q24]
Location_base_pair Starts at 132621140 and ends at 132628880 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DDX51   20082
Cards
Entrez_Gene (NCBI)DDX51  317781  DEAD-box helicase 51
Aliases
GeneCards (Weizmann)DDX51
Ensembl hg19 (Hinxton)ENSG00000185163 [Gene_View]  chr12:132621140-132628880 [Contig_View]  DDX51 [Vega]
Ensembl hg38 (Hinxton)ENSG00000185163 [Gene_View]  chr12:132621140-132628880 [Contig_View]  DDX51 [Vega]
ICGC DataPortalENSG00000185163
TCGA cBioPortalDDX51
AceView (NCBI)DDX51
Genatlas (Paris)DDX51
WikiGenes317781
SOURCE (Princeton)DDX51
Genetics Home Reference (NIH)DDX51
Genomic and cartography
GoldenPath hg19 (UCSC)DDX51  -     chr12:132621140-132628880 -  12q24.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)DDX51  -     12q24.33   [Description]    (hg38-Dec_2013)
EnsemblDDX51 - 12q24.33 [CytoView hg19]  DDX51 - 12q24.33 [CytoView hg38]
Mapping of homologs : NCBIDDX51 [Mapview hg19]  DDX51 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB593157 AK097078 AL079273 BC012461 BC029279
RefSeq transcript (Entrez)NM_175066
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_029419 NW_004929386
Consensus coding sequences : CCDS (NCBI)DDX51
Cluster EST : UnigeneHs.445168 [ NCBI ]
CGAP (NCI)Hs.445168
Alternative Splicing GalleryENSG00000185163
Gene ExpressionDDX51 [ NCBI-GEO ]   DDX51 [ EBI - ARRAY_EXPRESS ]   DDX51 [ SEEK ]   DDX51 [ MEM ]
Gene Expression Viewer (FireBrowse)DDX51 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)317781
GTEX Portal (Tissue expression)DDX51
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N8A6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N8A6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N8A6
Splice isoforms : SwissVarQ8N8A6
Catalytic activity : Enzyme3.6.4.13 [ Enzyme-Expasy ]   3.6.4.133.6.4.13 [ IntEnz-EBI ]   3.6.4.13 [ BRENDA ]   3.6.4.13 [ KEGG ]   
PhosPhoSitePlusQ8N8A6
Domaine pattern : Prosite (Expaxy)DEAD_ATP_HELICASE (PS00039)    HELICASE_ATP_BIND_1 (PS51192)    HELICASE_CTER (PS51194)   
Domains : Interpro (EBI)DEAD/DEAH_box_helicase_dom    Helicase_ATP-bd    Helicase_C    P-loop_NTPase    RNA-helicase_DEAD-box_CS   
Domain families : Pfam (Sanger)DEAD (PF00270)    Helicase_C (PF00271)   
Domain families : Pfam (NCBI)pfam00270    pfam00271   
Domain families : Smart (EMBL)DEXDc (SM00487)  HELICc (SM00490)  
Conserved Domain (NCBI)DDX51
DMDM Disease mutations317781
Blocks (Seattle)DDX51
SuperfamilyQ8N8A6
Human Protein AtlasENSG00000185163
Peptide AtlasQ8N8A6
HPRD10865
IPIIPI00217541   
Protein Interaction databases
DIP (DOE-UCLA)Q8N8A6
IntAct (EBI)Q8N8A6
FunCoupENSG00000185163
BioGRIDDDX51
STRING (EMBL)DDX51
ZODIACDDX51
Ontologies - Pathways
QuickGOQ8N8A6
Ontology : AmiGOATP-dependent RNA helicase activity  ATP binding  nucleolus  rRNA processing  RNA secondary structure unwinding  membrane  poly(A) RNA binding  
Ontology : EGO-EBIATP-dependent RNA helicase activity  ATP binding  nucleolus  rRNA processing  RNA secondary structure unwinding  membrane  poly(A) RNA binding  
NDEx NetworkDDX51
Atlas of Cancer Signalling NetworkDDX51
Wikipedia pathwaysDDX51
Orthology - Evolution
OrthoDB317781
GeneTree (enSembl)ENSG00000185163
Phylogenetic Trees/Animal Genes : TreeFamDDX51
HOVERGENQ8N8A6
HOGENOMQ8N8A6
Homologs : HomoloGeneDDX51
Homology/Alignments : Family Browser (UCSC)DDX51
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDDX51 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DDX51
dbVarDDX51
ClinVarDDX51
1000_GenomesDDX51 
Exome Variant ServerDDX51
ExAC (Exome Aggregation Consortium)DDX51 (select the gene name)
Genetic variants : HAPMAP317781
Genomic Variants (DGV)DDX51 [DGVbeta]
DECIPHER (Syndromes)12:132621140-132628880  ENSG00000185163
CONAN: Copy Number AnalysisDDX51 
Mutations
ICGC Data PortalDDX51 
TCGA Data PortalDDX51 
Broad Tumor PortalDDX51
OASIS PortalDDX51 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDDX51  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDDX51
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DDX51
DgiDB (Drug Gene Interaction Database)DDX51
DoCM (Curated mutations)DDX51 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DDX51 (select a term)
intoGenDDX51
Cancer3DDDX51(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenDDX51
Genetic Testing Registry DDX51
NextProtQ8N8A6 [Medical]
TSGene317781
GENETestsDDX51
Huge Navigator DDX51 [HugePedia]
snp3D : Map Gene to Disease317781
BioCentury BCIQDDX51
ClinGenDDX51
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD317781
Chemical/Pharm GKB GenePA134974036
Clinical trialDDX51
Miscellaneous
canSAR (ICR)DDX51 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDDX51
EVEXDDX51
GoPubMedDDX51
iHOPDDX51
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:02:59 CET 2017

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