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DDX56 (DEAD-box helicase 56)

Identity

Alias_namesDEAD (Asp-Glu-Ala-Asp) box polypeptide 56
DEAD (Asp-Glu-Ala-Asp) box helicase 56
Alias_symbol (synonym)NOH61
Other aliasDDX21
DDX26
HGNC (Hugo) DDX56
LocusID (NCBI) 54606
Atlas_Id 46765
Location 7p13  [Link to chromosome band 7p13]
Location_base_pair Starts at 44565417 and ends at 44574538 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DDX56 (7p13) / SAMM50 (22q13.31)DDX56 (7p13) / YKT6 (7p13)TMED4 (7p13) / DDX56 (7p13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DDX56   18193
Cards
Entrez_Gene (NCBI)DDX56  54606  DEAD-box helicase 56
AliasesDDX21; DDX26; NOH61
GeneCards (Weizmann)DDX56
Ensembl hg19 (Hinxton)ENSG00000136271 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000136271 [Gene_View]  chr7:44565417-44574538 [Contig_View]  DDX56 [Vega]
ICGC DataPortalENSG00000136271
TCGA cBioPortalDDX56
AceView (NCBI)DDX56
Genatlas (Paris)DDX56
WikiGenes54606
SOURCE (Princeton)DDX56
Genetics Home Reference (NIH)DDX56
Genomic and cartography
GoldenPath hg38 (UCSC)DDX56  -     chr7:44565417-44574538 -  7p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DDX56  -     7p13   [Description]    (hg19-Feb_2009)
EnsemblDDX56 - 7p13 [CytoView hg19]  DDX56 - 7p13 [CytoView hg38]
Mapping of homologs : NCBIDDX56 [Mapview hg19]  DDX56 [Mapview hg38]
OMIM608023   
Gene and transcription
Genbank (Entrez)AF247666 AJ131712 AK022774 AK125595 AK222662
RefSeq transcript (Entrez)NM_001257189 NM_019082
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DDX56
Cluster EST : UnigeneHs.654762 [ NCBI ]
CGAP (NCI)Hs.654762
Alternative Splicing GalleryENSG00000136271
Gene ExpressionDDX56 [ NCBI-GEO ]   DDX56 [ EBI - ARRAY_EXPRESS ]   DDX56 [ SEEK ]   DDX56 [ MEM ]
Gene Expression Viewer (FireBrowse)DDX56 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54606
GTEX Portal (Tissue expression)DDX56
Human Protein AtlasENSG00000136271-DDX56 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NY93   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NY93  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NY93
Splice isoforms : SwissVarQ9NY93
Catalytic activity : Enzyme3.6.4.13 [ Enzyme-Expasy ]   3.6.4.133.6.4.13 [ IntEnz-EBI ]   3.6.4.13 [ BRENDA ]   3.6.4.13 [ KEGG ]   
PhosPhoSitePlusQ9NY93
Domaine pattern : Prosite (Expaxy)HELICASE_ATP_BIND_1 (PS51192)    HELICASE_CTER (PS51194)    Q_MOTIF (PS51195)   
Domains : Interpro (EBI)DEAD/DEAH_box_helicase_dom    Helicase_ATP-bd    Helicase_C    P-loop_NTPase    RNA_helicase_DEAD_Q_motif   
Domain families : Pfam (Sanger)DEAD (PF00270)    Helicase_C (PF00271)   
Domain families : Pfam (NCBI)pfam00270    pfam00271   
Domain families : Smart (EMBL)DEXDc (SM00487)  HELICc (SM00490)  
Conserved Domain (NCBI)DDX56
DMDM Disease mutations54606
Blocks (Seattle)DDX56
SuperfamilyQ9NY93
Human Protein Atlas [tissue]ENSG00000136271-DDX56 [tissue]
Peptide AtlasQ9NY93
HPRD12154
IPIIPI00302281   IPI00926269   IPI00925037   IPI00925260   IPI00925990   IPI00925339   IPI00924551   
Protein Interaction databases
DIP (DOE-UCLA)Q9NY93
IntAct (EBI)Q9NY93
FunCoupENSG00000136271
BioGRIDDDX56
STRING (EMBL)DDX56
ZODIACDDX56
Ontologies - Pathways
QuickGOQ9NY93
Ontology : AmiGORNA binding  ATP-dependent RNA helicase activity  ATP binding  nucleolus  rRNA processing  RNA secondary structure unwinding  positive regulation of neuron projection development  membrane  
Ontology : EGO-EBIRNA binding  ATP-dependent RNA helicase activity  ATP binding  nucleolus  rRNA processing  RNA secondary structure unwinding  positive regulation of neuron projection development  membrane  
NDEx NetworkDDX56
Atlas of Cancer Signalling NetworkDDX56
Wikipedia pathwaysDDX56
Orthology - Evolution
OrthoDB54606
GeneTree (enSembl)ENSG00000136271
Phylogenetic Trees/Animal Genes : TreeFamDDX56
HOVERGENQ9NY93
HOGENOMQ9NY93
Homologs : HomoloGeneDDX56
Homology/Alignments : Family Browser (UCSC)DDX56
Gene fusions - Rearrangements
Tumor Fusion PortalDDX56
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDDX56 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DDX56
dbVarDDX56
ClinVarDDX56
1000_GenomesDDX56 
Exome Variant ServerDDX56
ExAC (Exome Aggregation Consortium)ENSG00000136271
GNOMAD BrowserENSG00000136271
Genetic variants : HAPMAP54606
Genomic Variants (DGV)DDX56 [DGVbeta]
DECIPHERDDX56 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDDX56 
Mutations
ICGC Data PortalDDX56 
TCGA Data PortalDDX56 
Broad Tumor PortalDDX56
OASIS PortalDDX56 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDDX56  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDDX56
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DDX56
DgiDB (Drug Gene Interaction Database)DDX56
DoCM (Curated mutations)DDX56 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DDX56 (select a term)
intoGenDDX56
Cancer3DDDX56(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608023   
Orphanet
DisGeNETDDX56
MedgenDDX56
Genetic Testing Registry DDX56
NextProtQ9NY93 [Medical]
TSGene54606
GENETestsDDX56
Target ValidationDDX56
Huge Navigator DDX56 [HugePedia]
snp3D : Map Gene to Disease54606
BioCentury BCIQDDX56
ClinGenDDX56
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54606
Chemical/Pharm GKB GenePA134916346
Clinical trialDDX56
Miscellaneous
canSAR (ICR)DDX56 (select the gene name)
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDDX56
EVEXDDX56
GoPubMedDDX56
iHOPDDX56
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:10:17 CET 2017

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