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DDX56 (DEAD-box helicase 56)

Identity

Alias (NCBI)DDX21
DDX26
NOH61
HGNC (Hugo) DDX56
HGNC Alias symbNOH61
HGNC Alias namenucleolar helicase of 61 kDa
HGNC Previous nameDEAD (Asp-Glu-Ala-Asp) box polypeptide 56
 DEAD (Asp-Glu-Ala-Asp) box helicase 56
LocusID (NCBI) 54606
Atlas_Id 46765
Location 7p13  [Link to chromosome band 7p13]
Location_base_pair Starts at 44565417 and ends at 44574538 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DDX56 (7p13)::SAMM50 (22q13.31)DDX56 (7p13)::YKT6 (7p13)TMED4 (7p13)::DDX56 (7p13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)DDX56   18193
Cards
Entrez_Gene (NCBI)DDX56    DEAD-box helicase 56
AliasesDDX21; DDX26; NOH61
GeneCards (Weizmann)DDX56
Ensembl hg19 (Hinxton)ENSG00000136271 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000136271 [Gene_View]  ENSG00000136271 [Sequence]  chr7:44565417-44574538 [Contig_View]  DDX56 [Vega]
ICGC DataPortalENSG00000136271
TCGA cBioPortalDDX56
AceView (NCBI)DDX56
Genatlas (Paris)DDX56
SOURCE (Princeton)DDX56
Genetics Home Reference (NIH)DDX56
Genomic and cartography
GoldenPath hg38 (UCSC)DDX56  -     chr7:44565417-44574538 -  7p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DDX56  -     7p13   [Description]    (hg19-Feb_2009)
GoldenPathDDX56 - 7p13 [CytoView hg19]  DDX56 - 7p13 [CytoView hg38]
ImmunoBaseENSG00000136271
Genome Data Viewer NCBIDDX56 [Mapview hg19]  
OMIM608023   
Gene and transcription
Genbank (Entrez)AF247666 AJ131712 AK022774 AK125595 AK222662
RefSeq transcript (Entrez)NM_001257189 NM_019082
Consensus coding sequences : CCDS (NCBI)DDX56
Gene ExpressionDDX56 [ NCBI-GEO ]   DDX56 [ EBI - ARRAY_EXPRESS ]   DDX56 [ SEEK ]   DDX56 [ MEM ]
Gene Expression Viewer (FireBrowse)DDX56 [ Firebrowse - Broad ]
GenevisibleExpression of DDX56 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54606
GTEX Portal (Tissue expression)DDX56
Human Protein AtlasENSG00000136271-DDX56 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NY93   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NY93  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NY93
Catalytic activity : Enzyme3.6.4.13 [ Enzyme-Expasy ]   3.6.4.133.6.4.13 [ IntEnz-EBI ]   3.6.4.13 [ BRENDA ]   3.6.4.13 [ KEGG ]   [ MEROPS ]
PhosPhoSitePlusQ9NY93
Domaine pattern : Prosite (Expaxy)HELICASE_ATP_BIND_1 (PS51192)    HELICASE_CTER (PS51194)    Q_MOTIF (PS51195)   
Domains : Interpro (EBI)DEAD/DEAH_box_helicase_dom    Helicase_ATP-bd    Helicase_C    P-loop_NTPase    RNA_helicase_DEAD_Q_motif   
Domain families : Pfam (Sanger)DEAD (PF00270)    Helicase_C (PF00271)   
Domain families : Pfam (NCBI)pfam00270    pfam00271   
Domain families : Smart (EMBL)DEXDc (SM00487)  HELICc (SM00490)  
Conserved Domain (NCBI)DDX56
SuperfamilyQ9NY93
AlphaFold pdb e-kbQ9NY93   
Human Protein Atlas [tissue]ENSG00000136271-DDX56 [tissue]
HPRD12154
Protein Interaction databases
DIP (DOE-UCLA)Q9NY93
IntAct (EBI)Q9NY93
BioGRIDDDX56
STRING (EMBL)DDX56
ZODIACDDX56
Ontologies - Pathways
QuickGOQ9NY93
Ontology : AmiGORNA binding  RNA helicase activity  protein binding  ATP binding  nucleolus  nucleolus  rRNA processing  positive regulation of neuron projection development  membrane  ATP hydrolysis activity  
Ontology : EGO-EBIRNA binding  RNA helicase activity  protein binding  ATP binding  nucleolus  nucleolus  rRNA processing  positive regulation of neuron projection development  membrane  ATP hydrolysis activity  
NDEx NetworkDDX56
Atlas of Cancer Signalling NetworkDDX56
Wikipedia pathwaysDDX56
Orthology - Evolution
OrthoDB54606
GeneTree (enSembl)ENSG00000136271
Phylogenetic Trees/Animal Genes : TreeFamDDX56
Homologs : HomoloGeneDDX56
Homology/Alignments : Family Browser (UCSC)DDX56
Gene fusions - Rearrangements
Fusion : QuiverDDX56
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDDX56 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DDX56
dbVarDDX56
ClinVarDDX56
MonarchDDX56
1000_GenomesDDX56 
Exome Variant ServerDDX56
GNOMAD BrowserENSG00000136271
Varsome BrowserDDX56
ACMGDDX56 variants
VarityQ9NY93
Genomic Variants (DGV)DDX56 [DGVbeta]
DECIPHERDDX56 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDDX56 
Mutations
ICGC Data PortalDDX56 
TCGA Data PortalDDX56 
Broad Tumor PortalDDX56
OASIS PortalDDX56 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDDX56  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DDDX56
Mutations and Diseases : HGMDDDX56
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaDDX56
DgiDB (Drug Gene Interaction Database)DDX56
DoCM (Curated mutations)DDX56
CIViC (Clinical Interpretations of Variants in Cancer)DDX56
Cancer3DDDX56
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608023   
Orphanet
DisGeNETDDX56
MedgenDDX56
Genetic Testing Registry DDX56
NextProtQ9NY93 [Medical]
GENETestsDDX56
Target ValidationDDX56
Huge Navigator DDX56 [HugePedia]
ClinGenDDX56
Clinical trials, drugs, therapy
MyCancerGenomeDDX56
Protein Interactions : CTDDDX56
Pharm GKB GenePA134916346
PharosQ9NY93
Clinical trialDDX56
Miscellaneous
canSAR (ICR)DDX56
HarmonizomeDDX56
ARCHS4DDX56
DataMed IndexDDX56
Probes
Litterature
PubMed78 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXDDX56
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jan 20 12:30:16 CET 2022

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