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DDX60L (DExD/H-box 60 like)

Identity

Alias (NCBI)-
HGNC (Hugo) DDX60L
HGNC Alias symbFLJ31033
HGNC Previous nameDEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like
LocusID (NCBI) 91351
Atlas_Id 62373
Location 4q32.3  [Link to chromosome band 4q32]
Location_base_pair Starts at 168356735 and ends at 168480492 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DDX60L (4q32.3) / DDX60L (4q32.3)DDX60L (4q32.3) / DSCAM (21q22.2)DDX60L (4q32.3) / PLRG1 (4q31.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)DDX60L   26429
Cards
Entrez_Gene (NCBI)DDX60L    DExD/H-box 60 like
Aliases
GeneCards (Weizmann)DDX60L
Ensembl hg19 (Hinxton)ENSG00000181381 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000181381 [Gene_View]  ENSG00000181381 [Sequence]  chr4:168356735-168480492 [Contig_View]  DDX60L [Vega]
ICGC DataPortalENSG00000181381
TCGA cBioPortalDDX60L
AceView (NCBI)DDX60L
Genatlas (Paris)DDX60L
SOURCE (Princeton)DDX60L
Genetics Home Reference (NIH)DDX60L
Genomic and cartography
GoldenPath hg38 (UCSC)DDX60L  -     chr4:168356735-168480492 -  4q32.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DDX60L  -     4q32.3   [Description]    (hg19-Feb_2009)
GoldenPathDDX60L - 4q32.3 [CytoView hg19]  DDX60L - 4q32.3 [CytoView hg38]
ImmunoBaseENSG00000181381
Genome Data Viewer NCBIDDX60L [Mapview hg19]  
OMIM616725   
Gene and transcription
Genbank (Entrez)AK023530 AK023743 AK055595 AK092461 AK096369
RefSeq transcript (Entrez)NM_001012967 NM_001291510 NM_001345927 NM_001378069 NM_001378070 NM_001378071 NM_001378072
Consensus coding sequences : CCDS (NCBI)DDX60L
Gene ExpressionDDX60L [ NCBI-GEO ]   DDX60L [ EBI - ARRAY_EXPRESS ]   DDX60L [ SEEK ]   DDX60L [ MEM ]
Gene Expression Viewer (FireBrowse)DDX60L [ Firebrowse - Broad ]
GenevisibleExpression of DDX60L in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)91351
GTEX Portal (Tissue expression)DDX60L
Human Protein AtlasENSG00000181381-DDX60L [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5H9U9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5H9U9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5H9U9
Catalytic activity : Enzyme3.6.4.13 [ Enzyme-Expasy ]   3.6.4.133.6.4.13 [ IntEnz-EBI ]   3.6.4.13 [ BRENDA ]   3.6.4.13 [ KEGG ]   [ MEROPS ]
PhosPhoSitePlusQ5H9U9
Domaine pattern : Prosite (Expaxy)HELICASE_ATP_BIND_1 (PS51192)    HELICASE_CTER (PS51194)   
Domains : Interpro (EBI)DEAD/DEAH_box_helicase_dom    Helicase_ATP-bd    Helicase_C    P-loop_NTPase   
Domain families : Pfam (Sanger)DEAD (PF00270)    Helicase_C (PF00271)   
Domain families : Pfam (NCBI)pfam00270    pfam00271   
Domain families : Smart (EMBL)DEXDc (SM00487)  HELICc (SM00490)  
Conserved Domain (NCBI)DDX60L
SuperfamilyQ5H9U9
AlphaFold pdb e-kbQ5H9U9   
Human Protein Atlas [tissue]ENSG00000181381-DDX60L [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q5H9U9
IntAct (EBI)Q5H9U9
BioGRIDDDX60L
STRING (EMBL)DDX60L
ZODIACDDX60L
Ontologies - Pathways
QuickGOQ5H9U9
Ontology : AmiGORNA binding  RNA helicase activity  ATP binding  hydrolase activity  
Ontology : EGO-EBIRNA binding  RNA helicase activity  ATP binding  hydrolase activity  
NDEx NetworkDDX60L
Atlas of Cancer Signalling NetworkDDX60L
Wikipedia pathwaysDDX60L
Orthology - Evolution
OrthoDB91351
GeneTree (enSembl)ENSG00000181381
Phylogenetic Trees/Animal Genes : TreeFamDDX60L
Homologs : HomoloGeneDDX60L
Homology/Alignments : Family Browser (UCSC)DDX60L
Gene fusions - Rearrangements
Fusion : QuiverDDX60L
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDDX60L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DDX60L
dbVarDDX60L
ClinVarDDX60L
MonarchDDX60L
1000_GenomesDDX60L 
Exome Variant ServerDDX60L
GNOMAD BrowserENSG00000181381
Varsome BrowserDDX60L
ACMGDDX60L variants
VarityQ5H9U9
Genomic Variants (DGV)DDX60L [DGVbeta]
DECIPHERDDX60L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDDX60L 
Mutations
ICGC Data PortalDDX60L 
TCGA Data PortalDDX60L 
Broad Tumor PortalDDX60L
OASIS PortalDDX60L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDDX60L  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DDDX60L
Mutations and Diseases : HGMDDDX60L
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaDDX60L
DgiDB (Drug Gene Interaction Database)DDX60L
DoCM (Curated mutations)DDX60L
CIViC (Clinical Interpretations of Variants in Cancer)DDX60L
Cancer3DDDX60L
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616725   
Orphanet
DisGeNETDDX60L
MedgenDDX60L
Genetic Testing Registry DDX60L
NextProtQ5H9U9 [Medical]
GENETestsDDX60L
Target ValidationDDX60L
Huge Navigator DDX60L [HugePedia]
ClinGenDDX60L
Clinical trials, drugs, therapy
MyCancerGenomeDDX60L
Protein Interactions : CTDDDX60L
Pharm GKB GenePA162383445
PharosQ5H9U9
Clinical trialDDX60L
Miscellaneous
canSAR (ICR)DDX60L
HarmonizomeDDX60L
DataMed IndexDDX60L
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXDDX60L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:47:34 CEST 2021

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