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DDX60L (DEAD-box helicase 60 like)

Identity

Alias_namesDEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like
Alias_symbol (synonym)FLJ31033
Other alias-
HGNC (Hugo) DDX60L
LocusID (NCBI) 91351
Atlas_Id 62373
Location 4q32.3  [Link to chromosome band 4q32]
Location_base_pair Starts at 168356735 and ends at 168480514 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DDX60L (4q32.3) / DDX60L (4q32.3)DDX60L (4q32.3) / DSCAM (21q22.2)DDX60L (4q32.3) / PLRG1 (4q31.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DDX60L   26429
Cards
Entrez_Gene (NCBI)DDX60L  91351  DEAD-box helicase 60 like
Aliases
GeneCards (Weizmann)DDX60L
Ensembl hg19 (Hinxton)ENSG00000181381 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000181381 [Gene_View]  chr4:168356735-168480514 [Contig_View]  DDX60L [Vega]
ICGC DataPortalENSG00000181381
TCGA cBioPortalDDX60L
AceView (NCBI)DDX60L
Genatlas (Paris)DDX60L
WikiGenes91351
SOURCE (Princeton)DDX60L
Genetics Home Reference (NIH)DDX60L
Genomic and cartography
GoldenPath hg38 (UCSC)DDX60L  -     chr4:168356735-168480514 -  4q32.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DDX60L  -     4q32.3   [Description]    (hg19-Feb_2009)
EnsemblDDX60L - 4q32.3 [CytoView hg19]  DDX60L - 4q32.3 [CytoView hg38]
Mapping of homologs : NCBIDDX60L [Mapview hg19]  DDX60L [Mapview hg38]
OMIM616725   
Gene and transcription
Genbank (Entrez)AK023530 AK023743 AK055595 AK092461 AK096369
RefSeq transcript (Entrez)NM_001012967 NM_001291510 NM_001345927
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DDX60L
Cluster EST : UnigeneHs.535011 [ NCBI ]
CGAP (NCI)Hs.535011
Alternative Splicing GalleryENSG00000181381
Gene ExpressionDDX60L [ NCBI-GEO ]   DDX60L [ EBI - ARRAY_EXPRESS ]   DDX60L [ SEEK ]   DDX60L [ MEM ]
Gene Expression Viewer (FireBrowse)DDX60L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)91351
GTEX Portal (Tissue expression)DDX60L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5H9U9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5H9U9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5H9U9
Splice isoforms : SwissVarQ5H9U9
Catalytic activity : Enzyme3.6.4.13 [ Enzyme-Expasy ]   3.6.4.133.6.4.13 [ IntEnz-EBI ]   3.6.4.13 [ BRENDA ]   3.6.4.13 [ KEGG ]   
PhosPhoSitePlusQ5H9U9
Domaine pattern : Prosite (Expaxy)HELICASE_ATP_BIND_1 (PS51192)    HELICASE_CTER (PS51194)   
Domains : Interpro (EBI)DEAD/DEAH_box_helicase_dom    Helicase_ATP-bd    Helicase_C    P-loop_NTPase   
Domain families : Pfam (Sanger)DEAD (PF00270)    Helicase_C (PF00271)   
Domain families : Pfam (NCBI)pfam00270    pfam00271   
Domain families : Smart (EMBL)DEXDc (SM00487)  HELICc (SM00490)  
Conserved Domain (NCBI)DDX60L
DMDM Disease mutations91351
Blocks (Seattle)DDX60L
SuperfamilyQ5H9U9
Human Protein AtlasENSG00000181381
Peptide AtlasQ5H9U9
IPIIPI00935252   IPI00853133   IPI00965293   IPI00964669   IPI00967015   IPI00964366   IPI00963999   
Protein Interaction databases
DIP (DOE-UCLA)Q5H9U9
IntAct (EBI)Q5H9U9
FunCoupENSG00000181381
BioGRIDDDX60L
STRING (EMBL)DDX60L
ZODIACDDX60L
Ontologies - Pathways
QuickGOQ5H9U9
Ontology : AmiGORNA binding  helicase activity  ATP binding  
Ontology : EGO-EBIRNA binding  helicase activity  ATP binding  
NDEx NetworkDDX60L
Atlas of Cancer Signalling NetworkDDX60L
Wikipedia pathwaysDDX60L
Orthology - Evolution
OrthoDB91351
GeneTree (enSembl)ENSG00000181381
Phylogenetic Trees/Animal Genes : TreeFamDDX60L
HOVERGENQ5H9U9
HOGENOMQ5H9U9
Homologs : HomoloGeneDDX60L
Homology/Alignments : Family Browser (UCSC)DDX60L
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDDX60L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DDX60L
dbVarDDX60L
ClinVarDDX60L
1000_GenomesDDX60L 
Exome Variant ServerDDX60L
ExAC (Exome Aggregation Consortium)DDX60L (select the gene name)
Genetic variants : HAPMAP91351
Genomic Variants (DGV)DDX60L [DGVbeta]
DECIPHERDDX60L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDDX60L 
Mutations
ICGC Data PortalDDX60L 
TCGA Data PortalDDX60L 
Broad Tumor PortalDDX60L
OASIS PortalDDX60L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDDX60L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDDX60L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DDX60L
DgiDB (Drug Gene Interaction Database)DDX60L
DoCM (Curated mutations)DDX60L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DDX60L (select a term)
intoGenDDX60L
Cancer3DDDX60L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616725   
Orphanet
MedgenDDX60L
Genetic Testing Registry DDX60L
NextProtQ5H9U9 [Medical]
TSGene91351
GENETestsDDX60L
Target ValidationDDX60L
Huge Navigator DDX60L [HugePedia]
snp3D : Map Gene to Disease91351
BioCentury BCIQDDX60L
ClinGenDDX60L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD91351
Chemical/Pharm GKB GenePA162383445
Clinical trialDDX60L
Miscellaneous
canSAR (ICR)DDX60L (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDDX60L
EVEXDDX60L
GoPubMedDDX60L
iHOPDDX60L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:45:31 CEST 2017

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