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DEDD (death effector domain containing)

Identity

Other aliasCASP8IP1
DEDD1
DEFT
FLDED1
KE05
HGNC (Hugo) DEDD
LocusID (NCBI) 9191
Atlas_Id 56750
Location 1q23.3  [Link to chromosome band 1q23]
Location_base_pair Starts at 161120978 and ends at 161132688 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DEDD   2755
Cards
Entrez_Gene (NCBI)DEDD  9191  death effector domain containing
AliasesCASP8IP1; DEDD1; DEFT; FLDED1; 
KE05
GeneCards (Weizmann)DEDD
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:161120978-161132688 [Contig_View]  DEDD [Vega]
TCGA cBioPortalDEDD
AceView (NCBI)DEDD
Genatlas (Paris)DEDD
WikiGenes9191
SOURCE (Princeton)DEDD
Genetics Home Reference (NIH)DEDD
Genomic and cartography
GoldenPath hg38 (UCSC)DEDD  -     chr1:161120978-161132688 -  1q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DEDD  -     1q23.3   [Description]    (hg19-Feb_2009)
EnsemblDEDD - 1q23.3 [CytoView hg19]  DEDD - 1q23.3 [CytoView hg38]
Mapping of homologs : NCBIDEDD [Mapview hg19]  DEDD [Mapview hg38]
OMIM606841   
Gene and transcription
Genbank (Entrez)AF043733 AF064605 AF083236 AF100341 AJ010973
RefSeq transcript (Entrez)NM_001039711 NM_001039712 NM_001330765 NM_004216 NM_032998
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DEDD
Cluster EST : UnigeneHs.744092 [ NCBI ]
CGAP (NCI)Hs.744092
Gene ExpressionDEDD [ NCBI-GEO ]   DEDD [ EBI - ARRAY_EXPRESS ]   DEDD [ SEEK ]   DEDD [ MEM ]
Gene Expression Viewer (FireBrowse)DEDD [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9191
GTEX Portal (Tissue expression)DEDD
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75618   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75618  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75618
Splice isoforms : SwissVarO75618
PhosPhoSitePlusO75618
Domaine pattern : Prosite (Expaxy)DED (PS50168)   
Domains : Interpro (EBI)DEATH-like_dom    DED_dom   
Domain families : Pfam (Sanger)DED (PF01335)   
Domain families : Pfam (NCBI)pfam01335   
Domain families : Smart (EMBL)DED (SM00031)  
Conserved Domain (NCBI)DEDD
DMDM Disease mutations9191
Blocks (Seattle)DEDD
SuperfamilyO75618
Peptide AtlasO75618
IPIIPI00004539   IPI00216748   IPI00909396   IPI00889781   
Protein Interaction databases
DIP (DOE-UCLA)O75618
IntAct (EBI)O75618
BioGRIDDEDD
STRING (EMBL)DEDD
ZODIACDEDD
Ontologies - Pathways
QuickGOO75618
Ontology : AmiGODNA binding  DNA binding  protein binding  nucleolus  nucleolus  cytoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  spermatogenesis  extrinsic apoptotic signaling pathway via death domain receptors  regulation of apoptotic process  
Ontology : EGO-EBIDNA binding  DNA binding  protein binding  nucleolus  nucleolus  cytoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  spermatogenesis  extrinsic apoptotic signaling pathway via death domain receptors  regulation of apoptotic process  
NDEx NetworkDEDD
Atlas of Cancer Signalling NetworkDEDD
Wikipedia pathwaysDEDD
Orthology - Evolution
OrthoDB9191
Phylogenetic Trees/Animal Genes : TreeFamDEDD
HOVERGENO75618
HOGENOMO75618
Homologs : HomoloGeneDEDD
Homology/Alignments : Family Browser (UCSC)DEDD
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDEDD [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DEDD
dbVarDEDD
ClinVarDEDD
1000_GenomesDEDD 
Exome Variant ServerDEDD
ExAC (Exome Aggregation Consortium)DEDD (select the gene name)
Genetic variants : HAPMAP9191
Genomic Variants (DGV)DEDD [DGVbeta]
DECIPHERDEDD [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDEDD 
Mutations
ICGC Data PortalDEDD 
TCGA Data PortalDEDD 
Broad Tumor PortalDEDD
OASIS PortalDEDD [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDEDD  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDEDD
BioMutasearch DEDD
DgiDB (Drug Gene Interaction Database)DEDD
DoCM (Curated mutations)DEDD (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DEDD (select a term)
intoGenDEDD
Cancer3DDEDD(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606841   
Orphanet
MedgenDEDD
Genetic Testing Registry DEDD
NextProtO75618 [Medical]
TSGene9191
GENETestsDEDD
Target ValidationDEDD
Huge Navigator DEDD [HugePedia]
snp3D : Map Gene to Disease9191
BioCentury BCIQDEDD
ClinGenDEDD
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9191
Chemical/Pharm GKB GenePA27236
Clinical trialDEDD
Miscellaneous
canSAR (ICR)DEDD (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDEDD
EVEXDEDD
GoPubMedDEDD
iHOPDEDD
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:30:55 CEST 2017

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