Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

DEFA9P (defensin alpha 9, pseudogene)

Identity

Alias_namesdefensin, alpha 9 pseudogene
Alias_symbol (synonym)DEFAP2
Other alias
HGNC (Hugo) DEFA9P
LocusID (NCBI) 449492
Atlas_Id 62385
Location 8p23.1  [Link to chromosome band 8p23]
Location_base_pair Starts at 6959289 and ends at 6960161 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DEFA9P   31800
Cards
Entrez_Gene (NCBI)DEFA9P  449492  defensin alpha 9, pseudogene
AliasesDEFAP2
GeneCards (Weizmann)DEFA9P
Ensembl hg19 (Hinxton)ENSG00000233238 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000233238 [Gene_View]  chr8:6959289-6960161 [Contig_View]  DEFA9P [Vega]
ICGC DataPortalENSG00000233238
TCGA cBioPortalDEFA9P
AceView (NCBI)DEFA9P
Genatlas (Paris)DEFA9P
WikiGenes449492
SOURCE (Princeton)DEFA9P
Genetics Home Reference (NIH)DEFA9P
Genomic and cartography
GoldenPath hg38 (UCSC)DEFA9P  -     chr8:6959289-6960161 -  8p23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DEFA9P  -     8p23.1   [Description]    (hg19-Feb_2009)
EnsemblDEFA9P - 8p23.1 [CytoView hg19]  DEFA9P - 8p23.1 [CytoView hg38]
Mapping of homologs : NCBIDEFA9P [Mapview hg19]  DEFA9P [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY746434
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DEFA9P
Cluster EST : UnigeneHs.552565 [ NCBI ]
CGAP (NCI)Hs.552565
Alternative Splicing GalleryENSG00000233238
Gene ExpressionDEFA9P [ NCBI-GEO ]   DEFA9P [ EBI - ARRAY_EXPRESS ]   DEFA9P [ SEEK ]   DEFA9P [ MEM ]
Gene Expression Viewer (FireBrowse)DEFA9P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)449492
GTEX Portal (Tissue expression)DEFA9P
Human Protein AtlasENSG00000233238-DEFA9P [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)DEFA9P
DMDM Disease mutations449492
Blocks (Seattle)DEFA9P
Human Protein Atlas [tissue]ENSG00000233238-DEFA9P [tissue]
Protein Interaction databases
FunCoupENSG00000233238
BioGRIDDEFA9P
STRING (EMBL)DEFA9P
ZODIACDEFA9P
Ontologies - Pathways
Huge Navigator DEFA9P [HugePedia]
snp3D : Map Gene to Disease449492
BioCentury BCIQDEFA9P
ClinGenDEFA9P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD449492
Chemical/Pharm GKB GenePA134993566
Clinical trialDEFA9P
Miscellaneous
canSAR (ICR)DEFA9P (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDEFA9P
EVEXDEFA9P
GoPubMedDEFA9P
iHOPDEFA9P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:44:16 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.